Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AC116345.2-201ENST00000512837 523 ntBASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 Z98259.2-201ENST00000641583 609 ntBASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC3Q9BQI4 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 PEG13-201ENST00000631594 5667 ntBASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 UFM1-202ENST00000379649 846 ntTSL 4 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 CICP12-201ENST00000455801 843 ntBASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 ALG3P1-201ENST00000508806 1114 ntBASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 IGLV3-15-201ENST00000518356 244 ntBASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 FADS2-212ENST00000522639 360 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 FADS2-215ENST00000574708 385 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 AC027601.3-201ENST00000622907 509 ntBASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 AC136759.1-202ENST00000530858 2194 ntBASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms