Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TM9SF4Q92544 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 Z97180.1-201ENST00000445173 988 ntBASIC13.9□□□□□ -0.18
TM9SF4Q92544 HIST2H2BC-201ENST00000498492 580 ntBASIC13.9□□□□□ -0.18
TM9SF4Q92544 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 AC091544.8-201ENST00000619490 361 ntBASIC13.9□□□□□ -0.18
TM9SF4Q92544 AC100757.4-201ENST00000626934 759 ntBASIC13.9□□□□□ -0.18
TM9SF4Q92544 AC138627.1-207ENST00000641560 1006 ntBASIC13.9□□□□□ -0.18
TM9SF4Q92544 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 KRT8P29-201ENST00000420409 1371 ntBASIC13.9□□□□□ -0.18
TM9SF4Q92544 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 AP001267.2-201ENST00000532619 2086 ntBASIC13.9□□□□□ -0.18
TM9SF4Q92544 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.9□□□□□ -0.18
TM9SF4Q92544 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TM9SF4Q92544 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.9□□□□□ -0.19
TM9SF4Q92544 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.9□□□□□ -0.19
TM9SF4Q92544 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
TM9SF4Q92544 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.19
TM9SF4Q92544 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 AC018529.2-202ENST00000611482 3087 ntBASIC13.89□□□□□ -0.19
TM9SF4Q92544 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.89□□□□□ -0.19
TM9SF4Q92544 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 AL391280.1-201ENST00000506969 1062 ntBASIC13.89□□□□□ -0.19
TM9SF4Q92544 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 AC106820.3-201ENST00000561653 397 ntBASIC13.89□□□□□ -0.19
TM9SF4Q92544 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 MIR3619-201ENST00000579667 83 ntBASIC13.89□□□□□ -0.19
TM9SF4Q92544 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 HCG18-245ENST00000602550 559 ntTSL 4 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 AC073413.1-201ENST00000603927 732 ntBASIC13.89□□□□□ -0.19
TM9SF4Q92544 AP001002.3-201ENST00000623482 206 ntBASIC13.89□□□□□ -0.19
TM9SF4Q92544 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TM9SF4Q92544 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
TM9SF4Q92544 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms