Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 AC097359.2-201ENST00000604992 2389 ntBASIC11.33□□□□□ -0.6
HIST1H1AQ02539 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 AMT-221ENST00000538581 2038 ntTSL 2 BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 AC093525.8-201ENST00000624099 1342 ntBASIC11.33□□□□□ -0.6
HIST1H1AQ02539 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC11.33□□□□□ -0.6
HIST1H1AQ02539 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AP001267.2-201ENST00000532619 2086 ntBASIC11.32□□□□□ -0.6
HIST1H1AQ02539 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AC105206.1-202ENST00000314927 2368 ntBASIC11.32□□□□□ -0.6
HIST1H1AQ02539 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AC018665.1-201ENST00000622927 1362 ntBASIC11.32□□□□□ -0.6
HIST1H1AQ02539 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 MST1P2-201ENST00000457982 2291 ntBASIC11.32□□□□□ -0.6
HIST1H1AQ02539 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AL645937.2-201ENST00000396808 931 ntBASIC11.32□□□□□ -0.6
HIST1H1AQ02539 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 GNAQP1-201ENST00000444815 1067 ntBASIC11.32□□□□□ -0.6
HIST1H1AQ02539 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AC093813.1-201ENST00000605066 256 ntBASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 BX539320.1-201ENST00000623759 877 ntBASIC11.32□□□□□ -0.6
HIST1H1AQ02539 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HIST1H1AQ02539 INTS4P2-202ENST00000614726 2019 ntBASIC11.31□□□□□ -0.6
HIST1H1AQ02539 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC11.31□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms