Protein–RNA interactions for Protein: P78415

IRX3, Iroquois-class homeodomain protein IRX-3, humanhuman

Predicted RBP Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX3P78415 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
IRX3P78415 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
IRX3P78415 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
IRX3P78415 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
IRX3P78415 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
IRX3P78415 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
IRX3P78415 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
IRX3P78415 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.13■□□□□ 0.33
IRX3P78415 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.13■□□□□ 0.33
IRX3P78415 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
IRX3P78415 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
IRX3P78415 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
IRX3P78415 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.13■□□□□ 0.33
IRX3P78415 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
IRX3P78415 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
IRX3P78415 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.12■□□□□ 0.33
IRX3P78415 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.12■□□□□ 0.33
IRX3P78415 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.12■□□□□ 0.33
IRX3P78415 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
IRX3P78415 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 AC087481.3-201ENST00000602886 1894 ntBASIC17.12■□□□□ 0.33
IRX3P78415 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
IRX3P78415 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC17.12■□□□□ 0.33
IRX3P78415 AL157407.1-201ENST00000435784 904 ntBASIC17.12■□□□□ 0.33
IRX3P78415 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC17.12■□□□□ 0.33
IRX3P78415 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.12■□□□□ 0.33
IRX3P78415 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC17.12■□□□□ 0.33
IRX3P78415 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.12■□□□□ 0.33
IRX3P78415 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC17.12■□□□□ 0.33
IRX3P78415 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.12■□□□□ 0.33
IRX3P78415 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.12■□□□□ 0.33
IRX3P78415 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 STK40-201ENST00000359297 4837 ntTSL 2 BASIC17.12■□□□□ 0.33
IRX3P78415 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 AP000845.1-201ENST00000581677 2131 ntBASIC17.12■□□□□ 0.33
IRX3P78415 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
IRX3P78415 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
IRX3P78415 HAL-202ENST00000538703 2637 ntTSL 2 BASIC17.12■□□□□ 0.33
IRX3P78415 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
IRX3P78415 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
IRX3P78415 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.11■□□□□ 0.33
IRX3P78415 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
IRX3P78415 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
IRX3P78415 AC023090.2-201ENST00000625182 2110 ntBASIC17.11■□□□□ 0.33
IRX3P78415 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC17.11■□□□□ 0.33
IRX3P78415 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC17.11■□□□□ 0.33
IRX3P78415 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 RN7SL258P-201ENST00000478664 300 ntBASIC17.11■□□□□ 0.33
IRX3P78415 AC006122.1-201ENST00000493323 440 ntBASIC17.11■□□□□ 0.33
IRX3P78415 AC008723.1-201ENST00000506922 207 ntBASIC17.11■□□□□ 0.33
IRX3P78415 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
IRX3P78415 STUB1-204ENST00000564370 875 ntTSL 2 BASIC17.11■□□□□ 0.33
IRX3P78415 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 WDR7-208ENST00000589935 544 ntTSL 4 BASIC17.11■□□□□ 0.33
IRX3P78415 BX088702.1-201ENST00000610784 235 ntBASIC17.11■□□□□ 0.33
IRX3P78415 RN7SL736P-201ENST00000613111 269 ntBASIC17.11■□□□□ 0.33
IRX3P78415 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC17.11■□□□□ 0.33
IRX3P78415 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC17.11■□□□□ 0.33
IRX3P78415 AC007718.1-201ENST00000621078 280 ntBASIC17.11■□□□□ 0.33
IRX3P78415 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 AC051619.9-201ENST00000623237 597 ntBASIC17.11■□□□□ 0.33
IRX3P78415 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
IRX3P78415 STK26-204ENST00000481105 1835 ntTSL 2 BASIC17.11■□□□□ 0.33
IRX3P78415 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 ZBED1P1-201ENST00000502364 1930 ntBASIC17.11■□□□□ 0.33
IRX3P78415 FAM90A2P-201ENST00000511144 1395 ntBASIC17.11■□□□□ 0.33
IRX3P78415 FAM90A25P-201ENST00000528404 1395 ntBASIC17.11■□□□□ 0.33
IRX3P78415 AC005840.4-201ENST00000541242 2494 ntBASIC17.11■□□□□ 0.33
IRX3P78415 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 RAN-210ENST00000541630 1475 ntTSL 2 BASIC17.11■□□□□ 0.33
IRX3P78415 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
IRX3P78415 AC005089.1-201ENST00000619486 2241 ntBASIC17.11■□□□□ 0.33
IRX3P78415 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
IRX3P78415 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
IRX3P78415 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms