Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC10.39□□□□□ -0.75
CKS1BP61024 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 HNRNPA1P28-201ENST00000424481 961 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 AC142381.1-201ENST00000426099 345 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC10.39□□□□□ -0.75
CKS1BP61024 AL591424.1-201ENST00000442569 1213 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 KRT18P2-201ENST00000447938 1258 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC10.39□□□□□ -0.75
CKS1BP61024 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC10.39□□□□□ -0.75
CKS1BP61024 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC10.39□□□□□ -0.75
CKS1BP61024 RPL13AP23-201ENST00000480739 586 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC10.39□□□□□ -0.75
CKS1BP61024 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC10.39□□□□□ -0.75
CKS1BP61024 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC10.39□□□□□ -0.75
CKS1BP61024 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC10.39□□□□□ -0.75
CKS1BP61024 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 HNRNPUP1-201ENST00000554987 333 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 KRT8P23-201ENST00000560090 1207 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 AC145285.3-201ENST00000564603 959 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC10.39□□□□□ -0.75
CKS1BP61024 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC10.39□□□□□ -0.75
CKS1BP61024 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC10.39□□□□□ -0.75
CKS1BP61024 AL513190.1-201ENST00000621254 727 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC10.39□□□□□ -0.75
CKS1BP61024 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 ZNF629-201ENST00000262525 6087 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 AC010336.1-201ENST00000539278 4739 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 TSPAN9-201ENST00000011898 4323 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 ZC3HAV1-201ENST00000242351 7100 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC10.39□□□□□ -0.75
CKS1BP61024 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
CKS1BP61024 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC10.39□□□□□ -0.75
CKS1BP61024 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC10.39□□□□□ -0.75
CKS1BP61024 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC10.39□□□□□ -0.75
CKS1BP61024 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC10.39□□□□□ -0.75
CKS1BP61024 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 GMEB2-201ENST00000266068 4559 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
CKS1BP61024 AC084364.1-201ENST00000551967 1556 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 AL607033.1-201ENST00000623900 1599 ntBASIC10.39□□□□□ -0.75
CKS1BP61024 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC10.39□□□□□ -0.75
CKS1BP61024 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 EXOC5-202ENST00000413566 8513 ntTSL 5 BASIC10.39□□□□□ -0.75
CKS1BP61024 RAB3IP-212ENST00000550536 9646 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 PHF20-203ENST00000374012 5922 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
CKS1BP61024 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 PDE5A-202ENST00000354960 7154 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC10.38□□□□□ -0.75
CKS1BP61024 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC10.38□□□□□ -0.75
CKS1BP61024 ATP11A-201ENST00000375630 8768 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
CKS1BP61024 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
CKS1BP61024 FOXO1B-201ENST00000504678 1527 ntBASIC10.38□□□□□ -0.75
CKS1BP61024 RPL27A-201ENST00000314138 4916 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 ALDH1L1-202ENST00000393431 2797 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 ABL2-204ENST00000502732 12144 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC10.38□□□□□ -0.75
CKS1BP61024 ADAMTSL2-202ENST00000393060 3725 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 SLC25A25-204ENST00000373069 3376 ntTSL 5 BASIC10.38□□□□□ -0.75
CKS1BP61024 SERINC5-202ENST00000507668 6479 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
CKS1BP61024 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC10.38□□□□□ -0.75
CKS1BP61024 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC10.38□□□□□ -0.75
CKS1BP61024 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 GEMIN5-201ENST00000285873 5397 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 SIGLEC1-201ENST00000344754 6720 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 EEF1DP4-201ENST00000446006 880 ntBASIC10.38□□□□□ -0.75
CKS1BP61024 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC10.38□□□□□ -0.75
CKS1BP61024 GATB-205ENST00000508611 605 ntTSL 2 BASIC10.38□□□□□ -0.75
CKS1BP61024 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC10.38□□□□□ -0.75
CKS1BP61024 RNF34-208ENST00000555076 593 ntTSL 3 BASIC10.38□□□□□ -0.75
CKS1BP61024 AC034105.1-201ENST00000563488 319 ntBASIC10.38□□□□□ -0.75
CKS1BP61024 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 AP000842.3-202ENST00000569238 1080 ntBASIC10.38□□□□□ -0.75
CKS1BP61024 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CKS1BP61024 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC10.38□□□□□ -0.75
CKS1BP61024 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC10.38□□□□□ -0.75
CKS1BP61024 AC104692.2-201ENST00000603054 253 ntBASIC10.38□□□□□ -0.75
CKS1BP61024 SRRT-215ENST00000614484 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms