Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.27■□□□□ 0.04
CDH6P55285 KRT17P8-201ENST00000540749 863 ntBASIC15.27■□□□□ 0.04
CDH6P55285 SORD2P-201ENST00000558556 1069 ntBASIC15.27■□□□□ 0.04
CDH6P55285 RHOXF1P1-202ENST00000635473 501 ntBASIC15.27■□□□□ 0.04
CDH6P55285 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CDH6P55285 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH6P55285 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH6P55285 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
CDH6P55285 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CDH6P55285 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.27■□□□□ 0.03
CDH6P55285 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.27■□□□□ 0.03
CDH6P55285 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC15.27■□□□□ 0.03
CDH6P55285 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH6P55285 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CDH6P55285 AC020910.6-201ENST00000623084 1459 ntBASIC15.27■□□□□ 0.03
CDH6P55285 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH6P55285 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDH6P55285 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.26■□□□□ 0.03
CDH6P55285 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CDH6P55285 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CDH6P55285 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC15.26■□□□□ 0.03
CDH6P55285 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.26■□□□□ 0.03
CDH6P55285 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 KRT8P28-201ENST00000433288 1390 ntBASIC15.26■□□□□ 0.03
CDH6P55285 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
CDH6P55285 AHCYP2-201ENST00000430630 1300 ntBASIC15.26■□□□□ 0.03
CDH6P55285 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.26■□□□□ 0.03
CDH6P55285 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.26■□□□□ 0.03
CDH6P55285 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 AC234783.1-201ENST00000441761 496 ntBASIC15.26■□□□□ 0.03
CDH6P55285 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CDH6P55285 AP000812.2-201ENST00000538934 718 ntBASIC15.26■□□□□ 0.03
CDH6P55285 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.26■□□□□ 0.03
CDH6P55285 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.26■□□□□ 0.03
CDH6P55285 AL358472.3-201ENST00000608147 415 ntBASIC15.26■□□□□ 0.03
CDH6P55285 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.26■□□□□ 0.03
CDH6P55285 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CDH6P55285 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
CDH6P55285 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CDH6P55285 PDIA3P1-201ENST00000471856 1510 ntBASIC15.26■□□□□ 0.03
CDH6P55285 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.26■□□□□ 0.03
CDH6P55285 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CDH6P55285 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.26■□□□□ 0.03
CDH6P55285 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDH6P55285 CICP16-201ENST00000502609 2813 ntBASIC15.25■□□□□ 0.03
CDH6P55285 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.25■□□□□ 0.03
CDH6P55285 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CDH6P55285 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 AC041040.2-201ENST00000622926 2899 ntBASIC15.25■□□□□ 0.03
CDH6P55285 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
CDH6P55285 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.25■□□□□ 0.03
CDH6P55285 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.25■□□□□ 0.03
CDH6P55285 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.25■□□□□ 0.03
CDH6P55285 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
CDH6P55285 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 RAB43P1-201ENST00000561790 589 ntBASIC15.25■□□□□ 0.03
CDH6P55285 PPY2P-201ENST00000582808 702 ntBASIC15.25■□□□□ 0.03
CDH6P55285 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.25■□□□□ 0.03
CDH6P55285 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDH6P55285 ZACNP1-201ENST00000612259 710 ntBASIC15.25■□□□□ 0.03
CDH6P55285 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.25■□□□□ 0.03
CDH6P55285 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC15.25■□□□□ 0.03
CDH6P55285 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CDH6P55285 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CDH6P55285 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms