Protein–RNA interactions for Protein: P49458

SRP9, Signal recognition particle 9 kDa protein, humanhuman

Known RBP Predictions only

Length 86 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP9P49458 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SRP9P49458 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SRP9P49458 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SRP9P49458 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SRP9P49458 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SRP9P49458 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
SRP9P49458 AC012617.1-204ENST00000586340 2305 ntBASIC13.1□□□□□ -0.31
SRP9P49458 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.1□□□□□ -0.31
SRP9P49458 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.09□□□□□ -0.31
SRP9P49458 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 CR383656.2-201ENST00000548656 2254 ntBASIC13.09□□□□□ -0.31
SRP9P49458 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
SRP9P49458 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 NUS1P3-201ENST00000423502 862 ntBASIC13.09□□□□□ -0.31
SRP9P49458 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC13.09□□□□□ -0.31
SRP9P49458 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC13.09□□□□□ -0.31
SRP9P49458 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 COX20P2-201ENST00000452636 358 ntBASIC13.09□□□□□ -0.31
SRP9P49458 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.09□□□□□ -0.31
SRP9P49458 RN7SL692P-201ENST00000464677 288 ntBASIC13.09□□□□□ -0.31
SRP9P49458 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.09□□□□□ -0.31
SRP9P49458 AC022447.6-201ENST00000515522 438 ntBASIC13.09□□□□□ -0.31
SRP9P49458 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.09□□□□□ -0.31
SRP9P49458 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.09□□□□□ -0.31
SRP9P49458 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.09□□□□□ -0.31
SRP9P49458 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.09□□□□□ -0.31
SRP9P49458 AL359711.2-201ENST00000563105 872 ntBASIC13.09□□□□□ -0.31
SRP9P49458 CTBP2P3-201ENST00000585629 1255 ntBASIC13.09□□□□□ -0.31
SRP9P49458 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
SRP9P49458 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SRP9P49458 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SRP9P49458 AL033527.5-201ENST00000641382 801 ntBASIC13.09□□□□□ -0.31
SRP9P49458 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC13.09□□□□□ -0.31
SRP9P49458 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.09□□□□□ -0.31
SRP9P49458 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 AC020658.7-201ENST00000624274 2442 ntBASIC13.09□□□□□ -0.31
SRP9P49458 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
SRP9P49458 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
SRP9P49458 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SRP9P49458 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SRP9P49458 AL138799.1-201ENST00000448213 1675 ntBASIC13.08□□□□□ -0.31
SRP9P49458 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
SRP9P49458 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SRP9P49458 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
SRP9P49458 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SRP9P49458 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SRP9P49458 AC015818.8-201ENST00000587907 1519 ntBASIC13.08□□□□□ -0.31
SRP9P49458 CICP16-201ENST00000502609 2813 ntBASIC13.08□□□□□ -0.31
SRP9P49458 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
SRP9P49458 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.08□□□□□ -0.31
SRP9P49458 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.31
SRP9P49458 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
SRP9P49458 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SRP9P49458 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.08□□□□□ -0.32
SRP9P49458 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
SRP9P49458 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
SRP9P49458 AL118506.1-201ENST00000601296 3082 ntBASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms