Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC18.6■□□□□ 0.57
COL18A1P39060 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL18A1P39060 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL18A1P39060 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 AC020931.1-201ENST00000589622 1346 ntBASIC18.59■□□□□ 0.57
COL18A1P39060 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC18.59■□□□□ 0.57
COL18A1P39060 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 CICP14-201ENST00000629111 2732 ntBASIC18.59■□□□□ 0.57
COL18A1P39060 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
COL18A1P39060 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.59■□□□□ 0.57
COL18A1P39060 EEF1DP5-201ENST00000431410 772 ntBASIC18.59■□□□□ 0.57
COL18A1P39060 RPSAP12-201ENST00000435879 888 ntBASIC18.59■□□□□ 0.57
COL18A1P39060 RNLS-203ENST00000437752 525 ntTSL 2 BASIC18.59■□□□□ 0.57
COL18A1P39060 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 FTLP5-201ENST00000586853 534 ntBASIC18.59■□□□□ 0.57
COL18A1P39060 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC18.59■□□□□ 0.57
COL18A1P39060 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
COL18A1P39060 GARS-210ENST00000627489 324 ntTSL 4 BASIC18.59■□□□□ 0.57
COL18A1P39060 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.59■□□□□ 0.57
COL18A1P39060 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.59■□□□□ 0.57
COL18A1P39060 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
COL18A1P39060 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.59■□□□□ 0.57
COL18A1P39060 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC18.59■□□□□ 0.57
COL18A1P39060 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL18A1P39060 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
COL18A1P39060 Z98885.3-201ENST00000624882 1757 ntBASIC18.59■□□□□ 0.57
COL18A1P39060 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.58■□□□□ 0.57
COL18A1P39060 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL18A1P39060 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL18A1P39060 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL18A1P39060 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL18A1P39060 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC18.58■□□□□ 0.57
COL18A1P39060 AC027612.2-202ENST00000445955 1199 ntBASIC18.58■□□□□ 0.57
COL18A1P39060 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC18.58■□□□□ 0.57
COL18A1P39060 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC18.58■□□□□ 0.57
COL18A1P39060 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC18.58■□□□□ 0.57
COL18A1P39060 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC18.58■□□□□ 0.57
COL18A1P39060 FAM187B2P-201ENST00000577135 713 ntBASIC18.58■□□□□ 0.57
COL18A1P39060 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC18.58■□□□□ 0.57
COL18A1P39060 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL18A1P39060 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL18A1P39060 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL18A1P39060 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL18A1P39060 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL18A1P39060 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL18A1P39060 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
COL18A1P39060 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
COL18A1P39060 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 DDC-204ENST00000426377 1700 ntTSL 3 BASIC18.58■□□□□ 0.56
COL18A1P39060 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
COL18A1P39060 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
COL18A1P39060 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL18A1P39060 DKKL1P1-201ENST00000400550 698 ntBASIC18.58■□□□□ 0.56
COL18A1P39060 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC18.58■□□□□ 0.56
COL18A1P39060 BAK1P2-201ENST00000532665 631 ntBASIC18.58■□□□□ 0.56
COL18A1P39060 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
COL18A1P39060 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC18.58■□□□□ 0.56
COL18A1P39060 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC18.58■□□□□ 0.56
COL18A1P39060 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL18A1P39060 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL18A1P39060 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL18A1P39060 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.57■□□□□ 0.56
COL18A1P39060 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC18.57■□□□□ 0.56
COL18A1P39060 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL18A1P39060 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL18A1P39060 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC18.57■□□□□ 0.56
COL18A1P39060 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL18A1P39060 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL18A1P39060 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC18.57■□□□□ 0.56
COL18A1P39060 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC18.57■□□□□ 0.56
COL18A1P39060 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC18.57■□□□□ 0.56
COL18A1P39060 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC18.57■□□□□ 0.56
COL18A1P39060 TBC1D3P6-201ENST00000505954 962 ntBASIC18.57■□□□□ 0.56
COL18A1P39060 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC18.57■□□□□ 0.56
COL18A1P39060 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL18A1P39060 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL18A1P39060 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms