Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC16.69■□□□□ 0.26
SCN4AP35499 RN7SL480P-201ENST00000581481 294 ntBASIC16.69■□□□□ 0.26
SCN4AP35499 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC16.69■□□□□ 0.26
SCN4AP35499 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC16.69■□□□□ 0.26
SCN4AP35499 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
SCN4AP35499 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SCN4AP35499 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SCN4AP35499 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.68■□□□□ 0.26
SCN4AP35499 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC16.68■□□□□ 0.26
SCN4AP35499 CFL1P6-201ENST00000400899 494 ntBASIC16.68■□□□□ 0.26
SCN4AP35499 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC16.68■□□□□ 0.26
SCN4AP35499 AL954722.1-201ENST00000431238 259 ntBASIC16.68■□□□□ 0.26
SCN4AP35499 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC16.68■□□□□ 0.26
SCN4AP35499 AC015818.1-201ENST00000451011 244 ntBASIC16.68■□□□□ 0.26
SCN4AP35499 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC16.68■□□□□ 0.26
SCN4AP35499 EMP3-204ENST00000596315 761 ntTSL 2 BASIC16.68■□□□□ 0.26
SCN4AP35499 BX322562.1-201ENST00000617004 561 ntBASIC16.68■□□□□ 0.26
SCN4AP35499 Z82244.2-201ENST00000632196 448 ntBASIC16.68■□□□□ 0.26
SCN4AP35499 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SCN4AP35499 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.68■□□□□ 0.26
SCN4AP35499 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
SCN4AP35499 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
SCN4AP35499 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC16.68■□□□□ 0.26
SCN4AP35499 RNA5SP420-201ENST00000516997 137 ntBASIC16.68■□□□□ 0.26
SCN4AP35499 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC16.68■□□□□ 0.26
SCN4AP35499 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC16.68■□□□□ 0.26
SCN4AP35499 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC16.68■□□□□ 0.26
SCN4AP35499 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC16.68■□□□□ 0.26
SCN4AP35499 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
SCN4AP35499 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SCN4AP35499 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.67■□□□□ 0.26
SCN4AP35499 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.67■□□□□ 0.26
SCN4AP35499 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.67■□□□□ 0.26
SCN4AP35499 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.67■□□□□ 0.26
SCN4AP35499 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC16.67■□□□□ 0.26
SCN4AP35499 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC16.67■□□□□ 0.26
SCN4AP35499 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 ASS1P1-201ENST00000402854 1237 ntBASIC16.67■□□□□ 0.26
SCN4AP35499 OR7E155P-201ENST00000412208 1014 ntBASIC16.67■□□□□ 0.26
SCN4AP35499 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC16.67■□□□□ 0.26
SCN4AP35499 RNA5SP288-201ENST00000516075 93 ntBASIC16.67■□□□□ 0.26
SCN4AP35499 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
SCN4AP35499 AC026120.2-201ENST00000617239 309 ntBASIC16.67■□□□□ 0.26
SCN4AP35499 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SCN4AP35499 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.67■□□□□ 0.26
SCN4AP35499 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SCN4AP35499 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCN4AP35499 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.66■□□□□ 0.26
SCN4AP35499 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.66■□□□□ 0.26
SCN4AP35499 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SCN4AP35499 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
SCN4AP35499 MPV17-209ENST00000405983 859 ntTSL 5 BASIC16.66■□□□□ 0.26
SCN4AP35499 TPT1P9-201ENST00000413759 514 ntBASIC16.66■□□□□ 0.26
SCN4AP35499 PGK1P2-201ENST00000431702 1214 ntBASIC16.66■□□□□ 0.26
SCN4AP35499 CDKN2A-AS1-201ENST00000441769 823 ntBASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms