Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 WASH7P-201ENST00000488147 1351 ntBASIC16.99■□□□□ 0.31
COL4A5P29400 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
COL4A5P29400 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
COL4A5P29400 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL4A5P29400 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC16.99■□□□□ 0.31
COL4A5P29400 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC16.99■□□□□ 0.31
COL4A5P29400 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.99■□□□□ 0.31
COL4A5P29400 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A5P29400 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A5P29400 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A5P29400 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC16.98■□□□□ 0.31
COL4A5P29400 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC16.98■□□□□ 0.31
COL4A5P29400 BCL2L12P1-201ENST00000508390 733 ntBASIC16.98■□□□□ 0.31
COL4A5P29400 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC16.98■□□□□ 0.31
COL4A5P29400 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A5P29400 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
COL4A5P29400 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A5P29400 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A5P29400 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A5P29400 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A5P29400 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A5P29400 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A5P29400 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A5P29400 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A5P29400 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A5P29400 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A5P29400 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 SIRPB3P-201ENST00000340424 1216 ntBASIC16.97■□□□□ 0.31
COL4A5P29400 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 SSR4-202ENST00000370085 526 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 HLA-DMA-202ENST00000395303 1007 ntBASIC16.97■□□□□ 0.31
COL4A5P29400 OR2W2P-201ENST00000406313 909 ntBASIC16.97■□□□□ 0.31
COL4A5P29400 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 KRT8P30-201ENST00000432100 650 ntBASIC16.97■□□□□ 0.31
COL4A5P29400 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
COL4A5P29400 BAK1P2-201ENST00000532665 631 ntBASIC16.97■□□□□ 0.31
COL4A5P29400 BMF-206ENST00000558774 671 ntTSL 3 BASIC16.97■□□□□ 0.31
COL4A5P29400 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
COL4A5P29400 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A5P29400 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
COL4A5P29400 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
COL4A5P29400 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A5P29400 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A5P29400 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
COL4A5P29400 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A5P29400 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
COL4A5P29400 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC16.97■□□□□ 0.31
COL4A5P29400 AC103563.1-201ENST00000429316 123 ntBASIC16.97■□□□□ 0.31
COL4A5P29400 AC092810.2-201ENST00000431570 362 ntBASIC16.97■□□□□ 0.31
COL4A5P29400 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC16.97■□□□□ 0.31
COL4A5P29400 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC16.97■□□□□ 0.31
COL4A5P29400 CTBP2P6-201ENST00000526402 1229 ntBASIC16.97■□□□□ 0.31
COL4A5P29400 AL512310.5-201ENST00000551999 515 ntBASIC16.97■□□□□ 0.31
COL4A5P29400 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 MED11-202ENST00000573708 802 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A5P29400 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A5P29400 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 DUT-208ENST00000559540 1441 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A5P29400 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
COL4A5P29400 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A5P29400 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A5P29400 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC16.96■□□□□ 0.31
COL4A5P29400 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A5P29400 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A5P29400 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A5P29400 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A5P29400 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A5P29400 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A5P29400 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A5P29400 AC103592.1-201ENST00000394513 664 ntBASIC16.96■□□□□ 0.31
COL4A5P29400 ACY3-202ENST00000529256 933 ntTSL 3 BASIC16.96■□□□□ 0.31
COL4A5P29400 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms