Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
COL8A1P27658 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
COL8A1P27658 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.78□□□□□ -0.36
COL8A1P27658 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 AP002414.2-201ENST00000591780 3365 ntBASIC12.78□□□□□ -0.36
COL8A1P27658 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC12.78□□□□□ -0.36
COL8A1P27658 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC12.78□□□□□ -0.36
COL8A1P27658 CICP12-201ENST00000455801 843 ntBASIC12.78□□□□□ -0.36
COL8A1P27658 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC12.78□□□□□ -0.36
COL8A1P27658 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 HNRNPA1P23-201ENST00000491091 1133 ntBASIC12.78□□□□□ -0.36
COL8A1P27658 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
COL8A1P27658 AC114947.1-202ENST00000514136 344 ntBASIC12.78□□□□□ -0.36
COL8A1P27658 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC12.78□□□□□ -0.36
COL8A1P27658 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC12.78□□□□□ -0.36
COL8A1P27658 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 AC104640.1-201ENST00000562617 2109 ntBASIC12.78□□□□□ -0.36
COL8A1P27658 AC008825.2-201ENST00000603374 718 ntBASIC12.78□□□□□ -0.36
COL8A1P27658 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC12.78□□□□□ -0.36
COL8A1P27658 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC12.78□□□□□ -0.36
COL8A1P27658 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.78□□□□□ -0.36
COL8A1P27658 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
COL8A1P27658 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL8A1P27658 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.36
COL8A1P27658 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL8A1P27658 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL8A1P27658 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL8A1P27658 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL8A1P27658 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC12.77□□□□□ -0.36
COL8A1P27658 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL8A1P27658 MARK2P16-201ENST00000605714 1723 ntBASIC12.77□□□□□ -0.36
COL8A1P27658 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL8A1P27658 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL8A1P27658 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
COL8A1P27658 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
COL8A1P27658 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC12.77□□□□□ -0.37
COL8A1P27658 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.77□□□□□ -0.37
COL8A1P27658 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC12.77□□□□□ -0.37
COL8A1P27658 AL603841.1-201ENST00000430516 664 ntBASIC12.77□□□□□ -0.37
COL8A1P27658 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC12.77□□□□□ -0.37
COL8A1P27658 CISD2-202ENST00000503643 808 ntTSL 2 BASIC12.77□□□□□ -0.37
COL8A1P27658 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC12.77□□□□□ -0.37
COL8A1P27658 MBP-238ENST00000580402 915 ntTSL 5 BASIC12.77□□□□□ -0.37
COL8A1P27658 MIR3188-201ENST00000583494 85 ntBASIC12.77□□□□□ -0.37
COL8A1P27658 AP005264.6-204ENST00000588436 719 ntBASIC12.77□□□□□ -0.37
COL8A1P27658 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC12.77□□□□□ -0.37
COL8A1P27658 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC12.77□□□□□ -0.37
COL8A1P27658 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC12.77□□□□□ -0.37
COL8A1P27658 AC027601.3-201ENST00000622907 509 ntBASIC12.77□□□□□ -0.37
COL8A1P27658 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.37
COL8A1P27658 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC12.77□□□□□ -0.37
COL8A1P27658 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL8A1P27658 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC12.77□□□□□ -0.37
COL8A1P27658 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC12.77□□□□□ -0.37
COL8A1P27658 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms