Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.64□□□□□ -0.07
COL6A3P12111 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
COL6A3P12111 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.64□□□□□ -0.07
COL6A3P12111 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC14.64□□□□□ -0.07
COL6A3P12111 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 C5orf38-203ENST00000457752 387 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
COL6A3P12111 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC14.64□□□□□ -0.07
COL6A3P12111 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.64□□□□□ -0.07
COL6A3P12111 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC14.64□□□□□ -0.07
COL6A3P12111 SOX2-OT-228ENST00000597828 864 ntTSL 5 BASIC14.64□□□□□ -0.07
COL6A3P12111 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL6A3P12111 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL6A3P12111 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.64□□□□□ -0.07
COL6A3P12111 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL6A3P12111 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC14.64□□□□□ -0.07
COL6A3P12111 GOLGA2-210ENST00000490628 428 ntTSL 2 BASIC14.64□□□□□ -0.07
COL6A3P12111 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.64□□□□□ -0.07
COL6A3P12111 AP001922.6-201ENST00000532553 546 ntTSL 5 BASIC14.64□□□□□ -0.07
COL6A3P12111 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 AL603832.3-203ENST00000606505 813 ntAPPRIS P5 TSL 5 BASIC14.64□□□□□ -0.07
COL6A3P12111 MIR6741-201ENST00000618782 63 ntBASIC14.64□□□□□ -0.07
COL6A3P12111 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC14.64□□□□□ -0.07
COL6A3P12111 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL6A3P12111 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.63□□□□□ -0.07
COL6A3P12111 TAGLN2-201ENST00000320307 709 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
COL6A3P12111 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 HNRNPA1P56-201ENST00000505767 954 ntBASIC14.63□□□□□ -0.07
COL6A3P12111 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC14.63□□□□□ -0.07
COL6A3P12111 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.63□□□□□ -0.07
COL6A3P12111 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC14.63□□□□□ -0.07
COL6A3P12111 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 FRG1-201ENST00000226798 1074 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 MIR602-201ENST00000384960 98 ntBASIC14.63□□□□□ -0.07
COL6A3P12111 AC073316.2-201ENST00000414126 418 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 TCP10L-202ENST00000472557 732 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC14.63□□□□□ -0.07
COL6A3P12111 AC012313.2-201ENST00000599952 1154 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A3P12111 RBP1-206ENST00000617459 667 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 AC245369.3-201ENST00000624687 411 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
COL6A3P12111 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
COL6A3P12111 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A3P12111 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A3P12111 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.63□□□□□ -0.07
COL6A3P12111 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL6A3P12111 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
COL6A3P12111 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.63□□□□□ -0.07
COL6A3P12111 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A3P12111 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL6A3P12111 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A3P12111 DLX4-206ENST00000611342 1662 ntBASIC14.62□□□□□ -0.07
COL6A3P12111 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.62□□□□□ -0.07
COL6A3P12111 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL6A3P12111 MPV17-209ENST00000405983 859 ntTSL 5 BASIC14.62□□□□□ -0.07
COL6A3P12111 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC14.62□□□□□ -0.07
COL6A3P12111 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.62□□□□□ -0.07
COL6A3P12111 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A3P12111 ZNF415-221ENST00000600574 563 ntTSL 3 BASIC14.62□□□□□ -0.07
COL6A3P12111 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 PPP4R1L-201ENST00000244070 1474 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
COL6A3P12111 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.62□□□□□ -0.07
COL6A3P12111 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 RNA5SP491-201ENST00000362936 118 ntBASIC14.62□□□□□ -0.07
COL6A3P12111 BX679664.3-201ENST00000414070 555 ntBASIC14.62□□□□□ -0.07
COL6A3P12111 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A3P12111 AC010163.1-201ENST00000434440 520 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A3P12111 AC145285.1-201ENST00000469929 694 ntBASIC14.62□□□□□ -0.07
COL6A3P12111 AC113935.1-201ENST00000471722 555 ntBASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms