Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCNAP12004 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PCNAP12004 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCNAP12004 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCNAP12004 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.37□□□□□ -0.11
PCNAP12004 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.37□□□□□ -0.11
PCNAP12004 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
PCNAP12004 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
PCNAP12004 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCNAP12004 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PCNAP12004 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCNAP12004 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCNAP12004 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCNAP12004 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PCNAP12004 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PCNAP12004 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.36□□□□□ -0.11
PCNAP12004 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.36□□□□□ -0.11
PCNAP12004 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PCNAP12004 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
PCNAP12004 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PCNAP12004 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PCNAP12004 SLC9A3P3-201ENST00000457608 2229 ntBASIC14.36□□□□□ -0.11
PCNAP12004 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
PCNAP12004 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.36□□□□□ -0.11
PCNAP12004 TTTY23B-201ENST00000442790 549 ntBASIC14.36□□□□□ -0.11
PCNAP12004 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 BCRP2-202ENST00000447763 634 ntBASIC14.36□□□□□ -0.11
PCNAP12004 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.36□□□□□ -0.11
PCNAP12004 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 BCRP6-201ENST00000510112 632 ntBASIC14.36□□□□□ -0.11
PCNAP12004 BCRP7-201ENST00000511549 544 ntBASIC14.36□□□□□ -0.11
PCNAP12004 AP001889.1-201ENST00000525414 633 ntBASIC14.36□□□□□ -0.11
PCNAP12004 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.36□□□□□ -0.11
PCNAP12004 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 AC132938.2-201ENST00000579188 680 ntBASIC14.36□□□□□ -0.11
PCNAP12004 MIR3197-201ENST00000582241 73 ntBASIC14.36□□□□□ -0.11
PCNAP12004 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.36□□□□□ -0.11
PCNAP12004 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.36□□□□□ -0.11
PCNAP12004 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.36□□□□□ -0.11
PCNAP12004 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
PCNAP12004 AL591163.1-201ENST00000641757 987 ntBASIC14.36□□□□□ -0.11
PCNAP12004 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 CLUHP2-201ENST00000426660 1303 ntBASIC14.36□□□□□ -0.11
PCNAP12004 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PCNAP12004 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.36□□□□□ -0.11
PCNAP12004 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PCNAP12004 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PCNAP12004 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PCNAP12004 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
PCNAP12004 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PCNAP12004 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 TPM3P8-201ENST00000330554 643 ntBASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms