Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CSB-PGBD3P0DP91 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 CSNK1G2P1-201ENST00000442675 955 ntBASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 RPL35P9-201ENST00000446059 350 ntBASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 AC018638.5-201ENST00000450885 754 ntBASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 PGAM1P12-201ENST00000505622 748 ntBASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 AC140658.4-201ENST00000561990 352 ntBASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 RN7SL665P-201ENST00000578793 300 ntBASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CSB-PGBD3P0DP91 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 AGGF1P1-201ENST00000509500 2073 ntBASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 RNA5SP406-201ENST00000516106 112 ntBASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 AC244250.3-201ENST00000620749 366 ntBASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 AC002472.4-201ENST00000641915 272 ntBASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 ZEB1-AS1-208ENST00000607166 2503 ntBASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 AL591122.2-201ENST00000624125 1853 ntBASIC19.18■□□□□ 0.66
CSB-PGBD3P0DP91 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 PAUPAR-201ENST00000630360 2965 ntBASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 PCDHA3-202ENST00000532566 4594 ntBASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 AC226150.1-201ENST00000544259 466 ntBASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 RN7SL596P-201ENST00000582123 288 ntBASIC19.17■□□□□ 0.66
CSB-PGBD3P0DP91 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms