Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-CQ95604 CASP2-203ENST00000392925 616 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-CQ95604 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
HLA-CQ95604 FAM21EP-201ENST00000417804 985 ntBASIC14.9□□□□□ -0.02
HLA-CQ95604 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-CQ95604 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 PEBP1P3-201ENST00000455475 548 ntBASIC14.9□□□□□ -0.02
HLA-CQ95604 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-CQ95604 PRSS3P1-201ENST00000503996 742 ntBASIC14.9□□□□□ -0.02
HLA-CQ95604 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 AC078814.4-201ENST00000546650 327 ntBASIC14.9□□□□□ -0.02
HLA-CQ95604 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 AC142086.5-202ENST00000562500 217 ntBASIC14.9□□□□□ -0.02
HLA-CQ95604 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-CQ95604 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-CQ95604 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-CQ95604 AL137246.1-201ENST00000607072 977 ntBASIC14.9□□□□□ -0.02
HLA-CQ95604 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-CQ95604 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-CQ95604 AL357143.1-203ENST00000639750 881 ntBASIC14.9□□□□□ -0.02
HLA-CQ95604 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 PKD1P5-201ENST00000532415 10291 ntBASIC14.9□□□□□ -0.02
HLA-CQ95604 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
HLA-CQ95604 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
HLA-CQ95604 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-CQ95604 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-CQ95604 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 LRRIQ3-203ENST00000370911 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
HLA-CQ95604 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-CQ95604 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC14.89□□□□□ -0.03
HLA-CQ95604 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HLA-CQ95604 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HLA-CQ95604 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HLA-CQ95604 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
HLA-CQ95604 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
HLA-CQ95604 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HLA-CQ95604 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.89□□□□□ -0.03
HLA-CQ95604 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-CQ95604 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-CQ95604 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-CQ95604 OR10N1P-201ENST00000392758 869 ntBASIC14.89□□□□□ -0.03
HLA-CQ95604 MED15P3-201ENST00000413613 326 ntBASIC14.89□□□□□ -0.03
HLA-CQ95604 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-CQ95604 AC136604.1-202ENST00000425471 771 ntBASIC14.89□□□□□ -0.03
HLA-CQ95604 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 AC116337.3-201ENST00000505200 846 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-CQ95604 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-CQ95604 SLC14A1-206ENST00000535474 1048 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 KLF17P1-201ENST00000547105 1126 ntBASIC14.89□□□□□ -0.03
HLA-CQ95604 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-CQ95604 AC120498.7-201ENST00000562876 330 ntBASIC14.89□□□□□ -0.03
HLA-CQ95604 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-CQ95604 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-CQ95604 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-CQ95604 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-CQ95604 URAHP-205ENST00000610227 398 ntBASIC14.89□□□□□ -0.03
HLA-CQ95604 AC091769.1-201ENST00000619576 568 ntBASIC14.89□□□□□ -0.03
HLA-CQ95604 AC073869.4-201ENST00000620841 800 ntBASIC14.89□□□□□ -0.03
HLA-CQ95604 AC020922.4-201ENST00000621389 339 ntBASIC14.89□□□□□ -0.03
HLA-CQ95604 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
HLA-CQ95604 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.89□□□□□ -0.03
HLA-CQ95604 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HLA-CQ95604 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-CQ95604 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms