Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 SOD2-202ENST00000367054 815 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 Z69890.1-201ENST00000382990 339 ntBASIC14.67□□□□□ -0.06
HMGB4Q8WW32 MIR557-201ENST00000385239 98 ntBASIC14.67□□□□□ -0.06
HMGB4Q8WW32 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 AL627422.1-201ENST00000434104 580 ntBASIC14.67□□□□□ -0.06
HMGB4Q8WW32 OR2R1P-201ENST00000441404 914 ntBASIC14.67□□□□□ -0.06
HMGB4Q8WW32 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 DUTP3-201ENST00000450025 415 ntBASIC14.67□□□□□ -0.06
HMGB4Q8WW32 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 CHCHD2P9-201ENST00000461726 456 ntBASIC14.67□□□□□ -0.06
HMGB4Q8WW32 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 SIGLEC18P-201ENST00000602271 909 ntBASIC14.67□□□□□ -0.06
HMGB4Q8WW32 AC009084.3-201ENST00000623356 437 ntBASIC14.67□□□□□ -0.06
HMGB4Q8WW32 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HMGB4Q8WW32 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 AC114501.1-201ENST00000445949 172 ntBASIC14.66□□□□□ -0.06
HMGB4Q8WW32 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 AC087392.5-201ENST00000612517 489 ntBASIC14.66□□□□□ -0.06
HMGB4Q8WW32 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 LINC02228-204ENST00000642115 2962 ntBASIC14.66□□□□□ -0.06
HMGB4Q8WW32 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 AC092384.3-202ENST00000564646 2873 ntBASIC14.66□□□□□ -0.06
HMGB4Q8WW32 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 AC009093.10-201ENST00000641956 1442 ntBASIC14.66□□□□□ -0.06
HMGB4Q8WW32 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGB4Q8WW32 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.65□□□□□ -0.06
HMGB4Q8WW32 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms