Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A2P12110 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A2P12110 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A2P12110 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A2P12110 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A2P12110 UGT1A2P-201ENST00000454886 866 ntBASIC14.53□□□□□ -0.08
COL6A2P12110 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
COL6A2P12110 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
COL6A2P12110 AC004233.3-201ENST00000607794 1269 ntBASIC14.53□□□□□ -0.08
COL6A2P12110 AC145423.3-201ENST00000615987 467 ntBASIC14.53□□□□□ -0.08
COL6A2P12110 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A2P12110 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.53□□□□□ -0.08
COL6A2P12110 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A2P12110 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
COL6A2P12110 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A2P12110 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A2P12110 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
COL6A2P12110 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A2P12110 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
COL6A2P12110 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.52□□□□□ -0.08
COL6A2P12110 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
COL6A2P12110 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.52□□□□□ -0.08
COL6A2P12110 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
COL6A2P12110 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC14.52□□□□□ -0.08
COL6A2P12110 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.52□□□□□ -0.08
COL6A2P12110 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.52□□□□□ -0.08
COL6A2P12110 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A2P12110 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 API5-211ENST00000534695 560 ntTSL 5 BASIC14.52□□□□□ -0.09
COL6A2P12110 AC027237.1-201ENST00000560942 655 ntBASIC14.52□□□□□ -0.09
COL6A2P12110 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.52□□□□□ -0.09
COL6A2P12110 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.52□□□□□ -0.09
COL6A2P12110 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 CTBP2P3-201ENST00000585629 1255 ntBASIC14.52□□□□□ -0.09
COL6A2P12110 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
COL6A2P12110 WFDC1-204ENST00000613603 549 ntBASIC14.52□□□□□ -0.09
COL6A2P12110 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
COL6A2P12110 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.52□□□□□ -0.09
COL6A2P12110 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
COL6A2P12110 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
COL6A2P12110 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A2P12110 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC14.52□□□□□ -0.09
COL6A2P12110 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
COL6A2P12110 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.51□□□□□ -0.09
COL6A2P12110 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
COL6A2P12110 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.51□□□□□ -0.09
COL6A2P12110 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
COL6A2P12110 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL6A2P12110 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
COL6A2P12110 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A2P12110 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms