Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 AC013355.1-201ENST00000562625 723 ntBASIC14.78□□□□□ -0.04
DKK3Q9UBP4 AC138649.2-201ENST00000615886 705 ntBASIC14.78□□□□□ -0.04
DKK3Q9UBP4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 SLC9A3P3-201ENST00000457608 2229 ntBASIC14.78□□□□□ -0.04
DKK3Q9UBP4 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 KHSRPP1-201ENST00000427983 1768 ntBASIC14.78□□□□□ -0.04
DKK3Q9UBP4 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
DKK3Q9UBP4 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
DKK3Q9UBP4 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 VDAC1P1-201ENST00000439229 848 ntBASIC14.77□□□□□ -0.05
DKK3Q9UBP4 AC104073.2-201ENST00000453737 312 ntBASIC14.77□□□□□ -0.05
DKK3Q9UBP4 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 HLA-J-204ENST00000495278 958 ntBASIC14.77□□□□□ -0.05
DKK3Q9UBP4 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 AL160314.3-201ENST00000556041 767 ntBASIC14.77□□□□□ -0.05
DKK3Q9UBP4 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 AC090164.2-201ENST00000611487 516 ntBASIC14.77□□□□□ -0.05
DKK3Q9UBP4 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 AC107918.4-201ENST00000641966 3141 ntBASIC14.77□□□□□ -0.05
DKK3Q9UBP4 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
DKK3Q9UBP4 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
DKK3Q9UBP4 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms