Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 MIR4538-201ENST00000581377 78 ntBASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 DIO1-215ENST00000610607 796 ntTSL 5 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 MIR6869-201ENST00000619434 62 ntBASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 POM121L10P-201ENST00000436994 1285 ntBASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 AC009955.4-201ENST00000597192 544 ntBASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 AC005695.3-201ENST00000614522 232 ntBASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM39Q9HCM9 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 E2F3P2-201ENST00000447755 1422 ntBASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 HNRNPA1P63-201ENST00000427917 963 ntBASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 AC104306.2-201ENST00000451877 341 ntBASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 CICP12-201ENST00000455801 843 ntBASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 ABBA01031663.1-201ENST00000635630 790 ntBASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms