Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 AC139712.1-201ENST00000378256 1875 ntBASIC15.19■□□□□ 0.02
PCDH9Q9HC56 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 TPM3P8-201ENST00000330554 643 ntBASIC15.19■□□□□ 0.02
PCDH9Q9HC56 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 U91328.1-201ENST00000437528 223 ntBASIC15.19■□□□□ 0.02
PCDH9Q9HC56 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 KRT17P8-201ENST00000540749 863 ntBASIC15.19■□□□□ 0.02
PCDH9Q9HC56 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 AC244669.2-201ENST00000612320 853 ntBASIC15.19■□□□□ 0.02
PCDH9Q9HC56 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
PCDH9Q9HC56 KHSRPP1-201ENST00000427983 1768 ntBASIC15.19■□□□□ 0.02
PCDH9Q9HC56 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 HSPA8P5-201ENST00000456928 2069 ntBASIC15.18■□□□□ 0.02
PCDH9Q9HC56 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 POM121L8P-201ENST00000417732 1281 ntBASIC15.18■□□□□ 0.02
PCDH9Q9HC56 POM121L9P-203ENST00000441984 1285 ntBASIC15.18■□□□□ 0.02
PCDH9Q9HC56 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 CROCCP4-201ENST00000457096 498 ntBASIC15.18■□□□□ 0.02
PCDH9Q9HC56 MESTP3-201ENST00000503460 968 ntBASIC15.18■□□□□ 0.02
PCDH9Q9HC56 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 AC089987.1-201ENST00000551654 2209 ntBASIC15.18■□□□□ 0.02
PCDH9Q9HC56 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH9Q9HC56 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 CLUHP2-201ENST00000426660 1303 ntBASIC15.17■□□□□ 0.02
PCDH9Q9HC56 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms