Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
CCDC28BQ9BUN5 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC28BQ9BUN5 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
CCDC28BQ9BUN5 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AL022342.1-201ENST00000400363 863 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 RPSAP43-201ENST00000402237 625 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AC114812.1-204ENST00000449669 728 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AL589987.1-201ENST00000453380 819 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AC125807.1-201ENST00000483097 614 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AC109322.1-201ENST00000524499 1264 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AC103988.2-201ENST00000561804 725 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AC140878.1-201ENST00000565277 250 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AL121894.2-201ENST00000602977 491 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 SRD5A3P1-201ENST00000603021 949 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AL671883.3-201ENST00000603274 991 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 TUBB8P4-201ENST00000511806 1324 ntBASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC28BQ9BUN5 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms