Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
IFT140Q96RY7 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
IFT140Q96RY7 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
IFT140Q96RY7 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
IFT140Q96RY7 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
IFT140Q96RY7 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
IFT140Q96RY7 DNM1P46-202ENST00000415963 882 ntBASIC23.33■■□□□ 1.33
IFT140Q96RY7 FAM86JP-202ENST00000484500 988 ntBASIC23.33■■□□□ 1.33
IFT140Q96RY7 CD81-209ENST00000492627 886 ntTSL 3 BASIC23.33■■□□□ 1.33
IFT140Q96RY7 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
IFT140Q96RY7 TPST2P1-201ENST00000564073 1102 ntBASIC23.33■■□□□ 1.33
IFT140Q96RY7 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
IFT140Q96RY7 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
IFT140Q96RY7 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC23.33■■□□□ 1.32
IFT140Q96RY7 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
IFT140Q96RY7 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC23.33■■□□□ 1.32
IFT140Q96RY7 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
IFT140Q96RY7 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 RNASEH2CP1-201ENST00000454281 502 ntBASIC23.32■■□□□ 1.32
IFT140Q96RY7 AC079250.1-201ENST00000456046 531 ntBASIC23.32■■□□□ 1.32
IFT140Q96RY7 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 RPS5-205ENST00000598495 800 ntTSL 3 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 Z98885.3-201ENST00000624882 1757 ntBASIC23.32■■□□□ 1.32
IFT140Q96RY7 BANP-204ENST00000393208 2283 ntTSL 2 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC23.32■■□□□ 1.32
IFT140Q96RY7 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
IFT140Q96RY7 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC23.31■■□□□ 1.32
IFT140Q96RY7 HMGA1P2-201ENST00000430198 324 ntBASIC23.31■■□□□ 1.32
IFT140Q96RY7 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC23.31■■□□□ 1.32
IFT140Q96RY7 AC015818.1-201ENST00000451011 244 ntBASIC23.31■■□□□ 1.32
IFT140Q96RY7 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC23.31■■□□□ 1.32
IFT140Q96RY7 MST1L-204ENST00000545160 559 ntTSL 4 BASIC23.31■■□□□ 1.32
IFT140Q96RY7 AC120498.5-201ENST00000561757 299 ntBASIC23.31■■□□□ 1.32
IFT140Q96RY7 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC23.31■■□□□ 1.32
IFT140Q96RY7 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC23.31■■□□□ 1.32
IFT140Q96RY7 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC23.31■■□□□ 1.32
IFT140Q96RY7 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC23.31■■□□□ 1.32
IFT140Q96RY7 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC23.31■■□□□ 1.32
IFT140Q96RY7 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 MYADML-201ENST00000474610 2147 ntBASIC23.31■■□□□ 1.32
IFT140Q96RY7 PES1P2-201ENST00000449745 1735 ntBASIC23.31■■□□□ 1.32
IFT140Q96RY7 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
IFT140Q96RY7 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 AC093106.1-201ENST00000437271 352 ntBASIC23.3■■□□□ 1.32
IFT140Q96RY7 GYG1-209ENST00000483267 801 ntTSL 2 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 RNA5SP288-201ENST00000516075 93 ntBASIC23.3■■□□□ 1.32
IFT140Q96RY7 AC023051.2-201ENST00000541141 460 ntBASIC23.3■■□□□ 1.32
IFT140Q96RY7 RN7SL300P-201ENST00000582522 318 ntBASIC23.3■■□□□ 1.32
IFT140Q96RY7 AC112220.4-201ENST00000604982 1263 ntBASIC23.3■■□□□ 1.32
IFT140Q96RY7 AC010503.4-201ENST00000615487 688 ntBASIC23.3■■□□□ 1.32
IFT140Q96RY7 GARS-210ENST00000627489 324 ntTSL 4 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
IFT140Q96RY7 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
IFT140Q96RY7 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms