Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 RHOC-205ENST00000369636 786 ntTSL 2 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 RN7SL479P-201ENST00000472003 300 ntBASIC14.43□□□□□ -0.1
TTC28Q96AY4 GIMD1-201ENST00000507153 654 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 PCTP-206ENST00000573500 919 ntTSL 3 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 AP001180.4-201ENST00000584167 823 ntTSL 3 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 OR10K2-201ENST00000314902 939 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 STEAP2-AS1-202ENST00000478318 627 ntTSL 3 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 MT3-202ENST00000561640 514 ntTSL 3 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TTC28Q96AY4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
TTC28Q96AY4 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 MYL1-202ENST00000352451 1065 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 TBC1D3P6-201ENST00000505954 962 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC092284.1-201ENST00000511386 1289 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 BAK1P2-201ENST00000532665 631 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC078925.1-201ENST00000535370 568 ntTSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 AL136298.3-201ENST00000556746 445 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC009132.1-201ENST00000565194 320 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC090616.6-202ENST00000583601 1088 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC011270.2-201ENST00000624293 2550 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC006987.1-201ENST00000413610 527 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 IL6RP1-201ENST00000417848 1273 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 YY1P2-201ENST00000438766 948 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 PRRX2-AS1-201ENST00000440413 429 ntTSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 BCAR1P1-201ENST00000553953 636 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 FOS-205ENST00000555242 629 ntTSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 AP001505.1-201ENST00000569966 824 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC091691.1-201ENST00000583587 1018 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 CDIPT-AS1-203ENST00000638164 713 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 AC139712.1-201ENST00000378256 1875 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 SSR4P1-203ENST00000599569 2260 ntBASIC14.42□□□□□ -0.1
TTC28Q96AY4 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms