Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 IFNWP2-201ENST00000431203 580 ntBASIC14.92□□□□□ -0.02
HLA-CQ95604 KRT18P62-201ENST00000446618 1287 ntBASIC14.92□□□□□ -0.02
HLA-CQ95604 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 GPX3-202ENST00000517973 612 ntTSL 3 BASIC14.92□□□□□ -0.02
HLA-CQ95604 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC14.92□□□□□ -0.02
HLA-CQ95604 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC14.92□□□□□ -0.02
HLA-CQ95604 AC091304.3-201ENST00000566500 716 ntBASIC14.92□□□□□ -0.02
HLA-CQ95604 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC14.92□□□□□ -0.02
HLA-CQ95604 AC006116.2-201ENST00000589958 988 ntBASIC14.92□□□□□ -0.02
HLA-CQ95604 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 AL009176.1-201ENST00000607876 650 ntBASIC14.92□□□□□ -0.02
HLA-CQ95604 GGNBP1-204ENST00000613113 887 ntBASIC14.92□□□□□ -0.02
HLA-CQ95604 AC005274.1-201ENST00000623460 802 ntBASIC14.92□□□□□ -0.02
HLA-CQ95604 HLF-202ENST00000430986 1385 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-CQ95604 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC14.92□□□□□ -0.02
HLA-CQ95604 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 AC019109.1-201ENST00000401725 1874 ntBASIC14.92□□□□□ -0.02
HLA-CQ95604 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-CQ95604 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-CQ95604 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-CQ95604 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-CQ95604 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-CQ95604 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
HLA-CQ95604 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HLA-CQ95604 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.92□□□□□ -0.02
HLA-CQ95604 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-CQ95604 AC138761.6-201ENST00000583997 1423 ntBASIC14.92□□□□□ -0.02
HLA-CQ95604 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-CQ95604 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-CQ95604 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-CQ95604 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-CQ95604 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
HLA-CQ95604 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 AL121949.3-201ENST00000406684 385 ntBASIC14.91□□□□□ -0.02
HLA-CQ95604 AC098657.1-201ENST00000416270 1135 ntBASIC14.91□□□□□ -0.02
HLA-CQ95604 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC14.91□□□□□ -0.02
HLA-CQ95604 RN7SL788P-201ENST00000460504 316 ntBASIC14.91□□□□□ -0.02
HLA-CQ95604 AC092903.1-201ENST00000466506 262 ntBASIC14.91□□□□□ -0.02
HLA-CQ95604 AC026412.1-206ENST00000502273 206 ntBASIC14.91□□□□□ -0.02
HLA-CQ95604 EEF1GP8-201ENST00000506566 1154 ntBASIC14.91□□□□□ -0.02
HLA-CQ95604 AC113347.2-201ENST00000512350 279 ntBASIC14.91□□□□□ -0.02
HLA-CQ95604 AC100858.1-201ENST00000514059 1228 ntBASIC14.91□□□□□ -0.02
HLA-CQ95604 AC087203.1-201ENST00000532111 1181 ntBASIC14.91□□□□□ -0.02
HLA-CQ95604 AL603832.2-201ENST00000566195 2125 ntBASIC14.91□□□□□ -0.02
HLA-CQ95604 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC14.91□□□□□ -0.02
HLA-CQ95604 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC14.91□□□□□ -0.02
HLA-CQ95604 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-CQ95604 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
HLA-CQ95604 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
HLA-CQ95604 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-CQ95604 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HLA-CQ95604 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.91□□□□□ -0.02
HLA-CQ95604 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-CQ95604 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.91□□□□□ -0.02
HLA-CQ95604 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-CQ95604 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
HLA-CQ95604 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
HLA-CQ95604 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.91□□□□□ -0.02
HLA-CQ95604 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-CQ95604 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-CQ95604 PCDHA12-202ENST00000613593 2588 ntBASIC14.9□□□□□ -0.02
HLA-CQ95604 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-CQ95604 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-CQ95604 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms