Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
SMC1BQ8NDV3 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.21■□□□□ 0.34
SMC1BQ8NDV3 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.34
SMC1BQ8NDV3 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
SMC1BQ8NDV3 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SMC1BQ8NDV3 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 SALL4P5-201ENST00000419001 1760 ntBASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 PGAM1P11-201ENST00000416729 680 ntBASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 SEPHS2P1-201ENST00000511618 1162 ntBASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 IGHV1-12-201ENST00000518307 205 ntBASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 AP000920.1-201ENST00000531824 344 ntBASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 AC078814.4-201ENST00000546650 327 ntBASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 GAS7-216ENST00000583882 553 ntTSL 5 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 TYMSP2-201ENST00000589501 424 ntBASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 AC026691.1-201ENST00000602502 2017 ntBASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SMC1BQ8NDV3 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 AL080243.1-201ENST00000423293 1060 ntBASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 PEBP1P3-201ENST00000455475 548 ntBASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 VENTXP3-201ENST00000546480 773 ntBASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 INO80E-209ENST00000567254 625 ntTSL 2 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 EEF1DP7-201ENST00000580496 513 ntBASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 AC006116.2-201ENST00000589958 988 ntBASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms