Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 GALP-202ENST00000440823 889 ntTSL 5 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 KRT18P37-201ENST00000520711 1282 ntBASIC18.07■□□□□ 0.48
RC3H1Q5TC82 DLK1-205ENST00000556051 469 ntTSL 2 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 CES1P2-201ENST00000566467 1242 ntBASIC18.07■□□□□ 0.48
RC3H1Q5TC82 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 DGAT2L7P-201ENST00000602462 744 ntBASIC18.07■□□□□ 0.48
RC3H1Q5TC82 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RC3H1Q5TC82 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 AC008894.3-201ENST00000624324 3103 ntBASIC18.06■□□□□ 0.48
RC3H1Q5TC82 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 KRT18P62-201ENST00000446618 1287 ntBASIC18.06■□□□□ 0.48
RC3H1Q5TC82 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 CMC2-204ENST00000562713 573 ntTSL 3 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 CMC2-209ENST00000565108 399 ntTSL 2 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 MBP-238ENST00000580402 915 ntTSL 5 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 MIR6074-201ENST00000612054 107 ntBASIC18.06■□□□□ 0.48
RC3H1Q5TC82 AP000769.1-203ENST00000637245 208 ntBASIC18.06■□□□□ 0.48
RC3H1Q5TC82 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 AC215219.1-201ENST00000400706 1817 ntBASIC18.06■□□□□ 0.48
RC3H1Q5TC82 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RC3H1Q5TC82 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 ASS1P2-201ENST00000439895 1223 ntBASIC18.05■□□□□ 0.48
RC3H1Q5TC82 SLC25A15P3-201ENST00000505530 290 ntBASIC18.05■□□□□ 0.48
RC3H1Q5TC82 EEF1GP8-201ENST00000506566 1154 ntBASIC18.05■□□□□ 0.48
RC3H1Q5TC82 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
RC3H1Q5TC82 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms