Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CICP17-201ENST00000418553 2377 ntBASIC17.06■□□□□ 0.32
CCDC144BQ3MJ40 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC144BQ3MJ40 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 KRT8P29-201ENST00000420409 1371 ntBASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 CRCP-204ENST00000398684 492 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 GHSR-202ENST00000427970 912 ntBASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 AL133466.1-201ENST00000447582 150 ntBASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 AC022217.1-201ENST00000521069 738 ntBASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 RN7SL774P-201ENST00000577467 290 ntBASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 AL023803.2-201ENST00000620080 638 ntBASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC144BQ3MJ40 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 AL157414.3-201ENST00000624276 1954 ntBASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 FKBP4P6-201ENST00000457486 1332 ntBASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 DPM3-202ENST00000368399 517 ntBASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 RNMTL1P1-201ENST00000454103 560 ntBASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 RN7SL720P-201ENST00000488178 304 ntBASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 AC026434.2-201ENST00000506094 1078 ntBASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 MIR4683-201ENST00000579659 81 ntBASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 AL645939.5-201ENST00000606834 243 ntBASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 AC067930.6-201ENST00000623257 4947 ntBASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CCDC144BQ3MJ40 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC144BQ3MJ40 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms