Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
TFF3Q07654 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.91□□□□□ -0.34
TFF3Q07654 MIR600HG-201ENST00000449175 5984 ntBASIC12.91□□□□□ -0.34
TFF3Q07654 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 FRMPD2B-201ENST00000431305 1347 ntBASIC12.9□□□□□ -0.34
TFF3Q07654 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 STK26-204ENST00000481105 1835 ntTSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 AL627389.1-201ENST00000413508 1182 ntBASIC12.9□□□□□ -0.34
TFF3Q07654 RPS9P1-201ENST00000419943 583 ntBASIC12.9□□□□□ -0.34
TFF3Q07654 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 PFN2-202ENST00000423691 911 ntTSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 AC130709.1-201ENST00000484779 1212 ntBASIC12.9□□□□□ -0.34
TFF3Q07654 GCOM2-201ENST00000509133 1104 ntBASIC12.9□□□□□ -0.34
TFF3Q07654 AP002803.1-201ENST00000528836 498 ntBASIC12.9□□□□□ -0.34
TFF3Q07654 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 AL031713.1-201ENST00000564813 661 ntBASIC12.9□□□□□ -0.34
TFF3Q07654 PHBP15-201ENST00000574228 665 ntBASIC12.9□□□□□ -0.34
TFF3Q07654 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC12.9□□□□□ -0.34
TFF3Q07654 NAT9-220ENST00000582870 896 ntTSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
TFF3Q07654 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC12.9□□□□□ -0.34
TFF3Q07654 MIR6769A-201ENST00000617340 73 ntBASIC12.9□□□□□ -0.34
TFF3Q07654 AC023090.2-201ENST00000625182 2110 ntBASIC12.9□□□□□ -0.34
TFF3Q07654 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
TFF3Q07654 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
TFF3Q07654 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
TFF3Q07654 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC12.9□□□□□ -0.35
TFF3Q07654 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.9□□□□□ -0.35
TFF3Q07654 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.35
TFF3Q07654 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
TFF3Q07654 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.35
TFF3Q07654 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.89□□□□□ -0.35
TFF3Q07654 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 TCAF2P1-201ENST00000291129 2421 ntBASIC12.89□□□□□ -0.35
TFF3Q07654 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.89□□□□□ -0.35
TFF3Q07654 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
TFF3Q07654 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
TFF3Q07654 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
TFF3Q07654 HPGD-203ENST00000422112 805 ntTSL 2 BASIC12.89□□□□□ -0.35
TFF3Q07654 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC12.89□□□□□ -0.35
TFF3Q07654 RPL7P35-201ENST00000446943 740 ntBASIC12.89□□□□□ -0.35
TFF3Q07654 AL035414.1-201ENST00000451327 857 ntBASIC12.89□□□□□ -0.35
TFF3Q07654 RN7SL818P-201ENST00000485099 259 ntBASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms