Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
LMO4P61968 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 LAP3P2-201ENST00000454686 1454 ntBASIC11.95□□□□□ -0.5
LMO4P61968 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC11.95□□□□□ -0.5
LMO4P61968 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LMO4P61968 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 CICP14-201ENST00000629111 2732 ntBASIC11.94□□□□□ -0.5
LMO4P61968 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 AL512430.1-201ENST00000392575 860 ntBASIC11.94□□□□□ -0.5
LMO4P61968 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 HPGD-203ENST00000422112 805 ntTSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC11.94□□□□□ -0.5
LMO4P61968 DNAJB1P1-201ENST00000429417 1024 ntBASIC11.94□□□□□ -0.5
LMO4P61968 AL627422.1-201ENST00000434104 580 ntBASIC11.94□□□□□ -0.5
LMO4P61968 AL161932.2-201ENST00000435436 679 ntBASIC11.94□□□□□ -0.5
LMO4P61968 AC253536.4-201ENST00000440539 267 ntBASIC11.94□□□□□ -0.5
LMO4P61968 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 FTH1P22-201ENST00000456305 520 ntBASIC11.94□□□□□ -0.5
LMO4P61968 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC11.94□□□□□ -0.5
LMO4P61968 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC11.94□□□□□ -0.5
LMO4P61968 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC11.94□□□□□ -0.5
LMO4P61968 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 AL031713.1-201ENST00000564813 661 ntBASIC11.94□□□□□ -0.5
LMO4P61968 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 MIR4522-201ENST00000584932 87 ntBASIC11.94□□□□□ -0.5
LMO4P61968 MIR6842-201ENST00000612539 65 ntBASIC11.94□□□□□ -0.5
LMO4P61968 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 MTHFR-210ENST00000641407 2387 ntBASIC11.94□□□□□ -0.5
LMO4P61968 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 MARK2P16-201ENST00000605714 1723 ntBASIC11.94□□□□□ -0.5
LMO4P61968 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC11.94□□□□□ -0.5
LMO4P61968 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 FGD5P1-202ENST00000614866 2498 ntBASIC11.94□□□□□ -0.5
LMO4P61968 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LMO4P61968 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
LMO4P61968 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
LMO4P61968 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC11.93□□□□□ -0.5
LMO4P61968 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC11.93□□□□□ -0.5
LMO4P61968 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC11.93□□□□□ -0.5
LMO4P61968 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC11.93□□□□□ -0.5
LMO4P61968 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC11.93□□□□□ -0.5
LMO4P61968 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LMO4P61968 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms