Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC17.11■□□□□ 0.33
RHBDL3P58872 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
RHBDL3P58872 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
RHBDL3P58872 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDL3P58872 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDL3P58872 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC17.11■□□□□ 0.33
RHBDL3P58872 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
RHBDL3P58872 AC067931.2-201ENST00000623655 2003 ntBASIC17.11■□□□□ 0.33
RHBDL3P58872 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RHBDL3P58872 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC17.1■□□□□ 0.33
RHBDL3P58872 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RHBDL3P58872 RPL18AP8-201ENST00000486071 528 ntBASIC17.1■□□□□ 0.33
RHBDL3P58872 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC17.1■□□□□ 0.33
RHBDL3P58872 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC17.1■□□□□ 0.33
RHBDL3P58872 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC17.1■□□□□ 0.33
RHBDL3P58872 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.1■□□□□ 0.33
RHBDL3P58872 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.1■□□□□ 0.33
RHBDL3P58872 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC17.1■□□□□ 0.33
RHBDL3P58872 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.1■□□□□ 0.33
RHBDL3P58872 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RHBDL3P58872 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC17.1■□□□□ 0.33
RHBDL3P58872 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDL3P58872 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.09■□□□□ 0.33
RHBDL3P58872 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.09■□□□□ 0.33
RHBDL3P58872 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC17.09■□□□□ 0.33
RHBDL3P58872 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC17.09■□□□□ 0.33
RHBDL3P58872 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC17.09■□□□□ 0.33
RHBDL3P58872 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC17.09■□□□□ 0.33
RHBDL3P58872 SKA2-205ENST00000580541 689 ntTSL 3 BASIC17.09■□□□□ 0.33
RHBDL3P58872 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC17.09■□□□□ 0.33
RHBDL3P58872 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC17.09■□□□□ 0.33
RHBDL3P58872 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RHBDL3P58872 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC17.09■□□□□ 0.33
RHBDL3P58872 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 API5-208ENST00000531273 1868 ntTSL 2 BASIC17.09■□□□□ 0.33
RHBDL3P58872 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC17.09■□□□□ 0.33
RHBDL3P58872 AC113367.3-201ENST00000508316 1912 ntBASIC17.09■□□□□ 0.33
RHBDL3P58872 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC17.09■□□□□ 0.33
RHBDL3P58872 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDL3P58872 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RHBDL3P58872 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
RHBDL3P58872 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
RHBDL3P58872 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RHBDL3P58872 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.08■□□□□ 0.33
RHBDL3P58872 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC17.08■□□□□ 0.33
RHBDL3P58872 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
RHBDL3P58872 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RHBDL3P58872 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.08■□□□□ 0.33
RHBDL3P58872 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC17.08■□□□□ 0.33
RHBDL3P58872 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RHBDL3P58872 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
RHBDL3P58872 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
RHBDL3P58872 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RHBDL3P58872 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC17.08■□□□□ 0.32
RHBDL3P58872 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
RHBDL3P58872 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RHBDL3P58872 BAX-205ENST00000391871 687 ntTSL 5 BASIC17.08■□□□□ 0.32
RHBDL3P58872 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RHBDL3P58872 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC17.08■□□□□ 0.32
RHBDL3P58872 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC17.08■□□□□ 0.32
RHBDL3P58872 AL512306.1-201ENST00000432698 848 ntBASIC17.08■□□□□ 0.32
RHBDL3P58872 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC17.08■□□□□ 0.32
RHBDL3P58872 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC17.08■□□□□ 0.32
RHBDL3P58872 AP000911.2-201ENST00000534330 502 ntBASIC17.08■□□□□ 0.32
RHBDL3P58872 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC17.08■□□□□ 0.32
RHBDL3P58872 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RHBDL3P58872 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms