Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.94□□□□□ -0.18
LIM2P55344 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.94□□□□□ -0.18
LIM2P55344 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
LIM2P55344 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.94□□□□□ -0.18
LIM2P55344 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.94□□□□□ -0.18
LIM2P55344 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.94□□□□□ -0.18
LIM2P55344 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.94□□□□□ -0.18
LIM2P55344 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.94□□□□□ -0.18
LIM2P55344 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
LIM2P55344 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.94□□□□□ -0.18
LIM2P55344 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.94□□□□□ -0.18
LIM2P55344 AL583810.1-201ENST00000553344 1045 ntBASIC13.94□□□□□ -0.18
LIM2P55344 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.94□□□□□ -0.18
LIM2P55344 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
LIM2P55344 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.94□□□□□ -0.18
LIM2P55344 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.94□□□□□ -0.18
LIM2P55344 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.94□□□□□ -0.18
LIM2P55344 AC244157.2-201ENST00000616239 1006 ntBASIC13.94□□□□□ -0.18
LIM2P55344 AC027601.3-201ENST00000622907 509 ntBASIC13.94□□□□□ -0.18
LIM2P55344 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC13.94□□□□□ -0.18
LIM2P55344 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
LIM2P55344 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.94□□□□□ -0.18
LIM2P55344 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
LIM2P55344 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.94□□□□□ -0.18
LIM2P55344 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
LIM2P55344 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIM2P55344 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.93□□□□□ -0.18
LIM2P55344 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
LIM2P55344 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
LIM2P55344 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.93□□□□□ -0.18
LIM2P55344 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
LIM2P55344 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
LIM2P55344 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.93□□□□□ -0.18
LIM2P55344 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 AL035414.1-201ENST00000451327 857 ntBASIC13.93□□□□□ -0.18
LIM2P55344 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.93□□□□□ -0.18
LIM2P55344 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.93□□□□□ -0.18
LIM2P55344 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.93□□□□□ -0.18
LIM2P55344 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.93□□□□□ -0.18
LIM2P55344 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.93□□□□□ -0.18
LIM2P55344 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.93□□□□□ -0.18
LIM2P55344 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.93□□□□□ -0.18
LIM2P55344 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.93□□□□□ -0.18
LIM2P55344 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.93□□□□□ -0.18
LIM2P55344 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
LIM2P55344 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
LIM2P55344 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
LIM2P55344 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.93□□□□□ -0.18
LIM2P55344 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.93□□□□□ -0.18
LIM2P55344 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIM2P55344 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.92□□□□□ -0.18
LIM2P55344 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.92□□□□□ -0.18
LIM2P55344 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
LIM2P55344 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
LIM2P55344 E2F3P2-201ENST00000447755 1422 ntBASIC13.92□□□□□ -0.18
LIM2P55344 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.92□□□□□ -0.18
LIM2P55344 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIM2P55344 AC015818.8-201ENST00000587907 1519 ntBASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms