Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
EPHB3P54753 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
EPHB3P54753 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.25■□□□□ 0.03
EPHB3P54753 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 AL583805.1-201ENST00000391389 531 ntBASIC15.25■□□□□ 0.03
EPHB3P54753 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 AC069218.1-201ENST00000435269 762 ntBASIC15.25■□□□□ 0.03
EPHB3P54753 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.25■□□□□ 0.03
EPHB3P54753 RPSAP15-201ENST00000448168 861 ntBASIC15.25■□□□□ 0.03
EPHB3P54753 AP000358.1-201ENST00000456260 156 ntBASIC15.25■□□□□ 0.03
EPHB3P54753 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC15.25■□□□□ 0.03
EPHB3P54753 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC15.25■□□□□ 0.03
EPHB3P54753 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC15.25■□□□□ 0.03
EPHB3P54753 TPM1-223ENST00000560445 485 ntTSL 3 BASIC15.25■□□□□ 0.03
EPHB3P54753 MIR3677-201ENST00000578964 60 ntBASIC15.25■□□□□ 0.03
EPHB3P54753 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC15.25■□□□□ 0.03
EPHB3P54753 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 AL591471.1-201ENST00000621855 229 ntBASIC15.25■□□□□ 0.03
EPHB3P54753 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 AJ011931.1-201ENST00000618749 2492 ntBASIC15.25■□□□□ 0.03
EPHB3P54753 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
EPHB3P54753 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
EPHB3P54753 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.25■□□□□ 0.03
EPHB3P54753 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
EPHB3P54753 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
EPHB3P54753 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.24■□□□□ 0.03
EPHB3P54753 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.24■□□□□ 0.03
EPHB3P54753 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
EPHB3P54753 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.24■□□□□ 0.03
EPHB3P54753 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
EPHB3P54753 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.24■□□□□ 0.03
EPHB3P54753 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC15.24■□□□□ 0.03
EPHB3P54753 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.24■□□□□ 0.03
EPHB3P54753 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
EPHB3P54753 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.24■□□□□ 0.03
EPHB3P54753 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.24■□□□□ 0.03
EPHB3P54753 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC15.24■□□□□ 0.03
EPHB3P54753 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC15.24■□□□□ 0.03
EPHB3P54753 DUX4L50-201ENST00000455245 715 ntBASIC15.24■□□□□ 0.03
EPHB3P54753 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.24■□□□□ 0.03
EPHB3P54753 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.24■□□□□ 0.03
EPHB3P54753 AC093752.3-201ENST00000567343 901 ntBASIC15.24■□□□□ 0.03
EPHB3P54753 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
EPHB3P54753 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.24■□□□□ 0.03
EPHB3P54753 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.24■□□□□ 0.03
EPHB3P54753 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.24■□□□□ 0.03
EPHB3P54753 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.24■□□□□ 0.03
EPHB3P54753 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.24■□□□□ 0.03
EPHB3P54753 AC097376.2-205ENST00000610159 5334 ntBASIC15.24■□□□□ 0.03
EPHB3P54753 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.24■□□□□ 0.03
EPHB3P54753 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.24■□□□□ 0.03
EPHB3P54753 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
EPHB3P54753 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
EPHB3P54753 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms