Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
MRE11P49959 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC17.24■□□□□ 0.35
MRE11P49959 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.24■□□□□ 0.35
MRE11P49959 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.24■□□□□ 0.35
MRE11P49959 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
MRE11P49959 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC17.24■□□□□ 0.35
MRE11P49959 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MRE11P49959 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.24■□□□□ 0.35
MRE11P49959 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
MRE11P49959 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
MRE11P49959 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.24■□□□□ 0.35
MRE11P49959 KRT8P23-201ENST00000560090 1207 ntBASIC17.24■□□□□ 0.35
MRE11P49959 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC17.24■□□□□ 0.35
MRE11P49959 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.24■□□□□ 0.35
MRE11P49959 AL645728.2-202ENST00000641679 227 ntBASIC17.24■□□□□ 0.35
MRE11P49959 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
MRE11P49959 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
MRE11P49959 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
MRE11P49959 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC17.24■□□□□ 0.35
MRE11P49959 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MRE11P49959 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.23■□□□□ 0.35
MRE11P49959 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.23■□□□□ 0.35
MRE11P49959 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 RET-205ENST00000615310 4337 ntTSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 AL365181.3-201ENST00000605886 3222 ntBASIC17.23■□□□□ 0.35
MRE11P49959 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.23■□□□□ 0.35
MRE11P49959 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
MRE11P49959 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 NME1-209ENST00000511355 1645 ntTSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.23■□□□□ 0.35
MRE11P49959 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.23■□□□□ 0.35
MRE11P49959 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.23■□□□□ 0.35
MRE11P49959 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 AC099522.2-201ENST00000607001 744 ntBASIC17.23■□□□□ 0.35
MRE11P49959 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 AC099568.2-201ENST00000609194 695 ntBASIC17.23■□□□□ 0.35
MRE11P49959 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
MRE11P49959 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MRE11P49959 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
MRE11P49959 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.23■□□□□ 0.35
MRE11P49959 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC17.23■□□□□ 0.35
MRE11P49959 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 AC022144.1-201ENST00000602255 1580 ntBASIC17.23■□□□□ 0.35
MRE11P49959 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC17.23■□□□□ 0.35
MRE11P49959 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MRE11P49959 TNN-202ENST00000621086 4234 ntTSL 5 BASIC17.23■□□□□ 0.35
MRE11P49959 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MRE11P49959 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC17.22■□□□□ 0.35
MRE11P49959 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms