Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.14■□□□□ 0.33
BRCA1P38398 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 GH1-203ENST00000351388 685 ntTSL 2 BASIC17.14■□□□□ 0.33
BRCA1P38398 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 RPL29P2-201ENST00000488409 460 ntBASIC17.14■□□□□ 0.33
BRCA1P38398 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC17.14■□□□□ 0.33
BRCA1P38398 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
BRCA1P38398 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC17.14■□□□□ 0.33
BRCA1P38398 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC17.14■□□□□ 0.33
BRCA1P38398 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC17.14■□□□□ 0.33
BRCA1P38398 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
BRCA1P38398 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 PES1P2-201ENST00000449745 1735 ntBASIC17.13■□□□□ 0.33
BRCA1P38398 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
BRCA1P38398 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
BRCA1P38398 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.13■□□□□ 0.33
BRCA1P38398 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
BRCA1P38398 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 OR7E12P-201ENST00000344740 973 ntBASIC17.13■□□□□ 0.33
BRCA1P38398 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC17.13■□□□□ 0.33
BRCA1P38398 AL954722.1-201ENST00000431238 259 ntBASIC17.13■□□□□ 0.33
BRCA1P38398 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 CDKN2A-AS1-201ENST00000441769 823 ntBASIC17.13■□□□□ 0.33
BRCA1P38398 AC079250.1-201ENST00000456046 531 ntBASIC17.13■□□□□ 0.33
BRCA1P38398 AP000533.1-201ENST00000456143 1177 ntBASIC17.13■□□□□ 0.33
BRCA1P38398 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC17.13■□□□□ 0.33
BRCA1P38398 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC17.13■□□□□ 0.33
BRCA1P38398 AC139100.2-201ENST00000616901 662 ntBASIC17.13■□□□□ 0.33
BRCA1P38398 Z82244.2-201ENST00000632196 448 ntBASIC17.13■□□□□ 0.33
BRCA1P38398 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
BRCA1P38398 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC17.13■□□□□ 0.33
BRCA1P38398 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.13■□□□□ 0.33
BRCA1P38398 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BRCA1P38398 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.12■□□□□ 0.33
BRCA1P38398 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.12■□□□□ 0.33
BRCA1P38398 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
BRCA1P38398 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC17.12■□□□□ 0.33
BRCA1P38398 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 TPT1P9-201ENST00000413759 514 ntBASIC17.12■□□□□ 0.33
BRCA1P38398 BX088651.3-201ENST00000418155 352 ntBASIC17.12■□□□□ 0.33
BRCA1P38398 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC17.12■□□□□ 0.33
BRCA1P38398 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC17.12■□□□□ 0.33
BRCA1P38398 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC17.12■□□□□ 0.33
BRCA1P38398 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 AC233724.9-201ENST00000511694 407 ntBASIC17.12■□□□□ 0.33
BRCA1P38398 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC17.12■□□□□ 0.33
BRCA1P38398 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC17.12■□□□□ 0.33
BRCA1P38398 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
BRCA1P38398 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
BRCA1P38398 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
BRCA1P38398 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 KRT18P44-201ENST00000416086 1285 ntBASIC17.12■□□□□ 0.33
BRCA1P38398 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.12■□□□□ 0.33
BRCA1P38398 RPL18AP15-201ENST00000430258 517 ntBASIC17.12■□□□□ 0.33
BRCA1P38398 MARK2P17-201ENST00000498560 841 ntBASIC17.12■□□□□ 0.33
BRCA1P38398 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC17.12■□□□□ 0.33
BRCA1P38398 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC17.12■□□□□ 0.33
BRCA1P38398 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BRCA1P38398 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
BRCA1P38398 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 AL139158.3-201ENST00000641212 1562 ntBASIC17.11■□□□□ 0.33
BRCA1P38398 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BRCA1P38398 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms