Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
COL8A1P27658 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC12.82□□□□□ -0.36
COL8A1P27658 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 MIR648-201ENST00000385046 94 ntBASIC12.82□□□□□ -0.36
COL8A1P27658 MIR566-201ENST00000385187 94 ntBASIC12.82□□□□□ -0.36
COL8A1P27658 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 SKA2-202ENST00000437036 625 ntTSL 2 BASIC12.82□□□□□ -0.36
COL8A1P27658 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 AC006122.1-201ENST00000493323 440 ntBASIC12.82□□□□□ -0.36
COL8A1P27658 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC12.82□□□□□ -0.36
COL8A1P27658 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC12.82□□□□□ -0.36
COL8A1P27658 AC021016.3-201ENST00000608367 477 ntBASIC12.82□□□□□ -0.36
COL8A1P27658 AP000322.3-201ENST00000608665 388 ntBASIC12.82□□□□□ -0.36
COL8A1P27658 PTPN20CP-201ENST00000614090 920 ntBASIC12.82□□□□□ -0.36
COL8A1P27658 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
COL8A1P27658 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC12.82□□□□□ -0.36
COL8A1P27658 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC12.82□□□□□ -0.36
COL8A1P27658 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
COL8A1P27658 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
COL8A1P27658 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.82□□□□□ -0.36
COL8A1P27658 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
COL8A1P27658 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC12.82□□□□□ -0.36
COL8A1P27658 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC12.82□□□□□ -0.36
COL8A1P27658 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.82□□□□□ -0.36
COL8A1P27658 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC12.82□□□□□ -0.36
COL8A1P27658 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
COL8A1P27658 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
COL8A1P27658 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.82□□□□□ -0.36
COL8A1P27658 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL8A1P27658 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC12.82□□□□□ -0.36
COL8A1P27658 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC12.82□□□□□ -0.36
COL8A1P27658 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
COL8A1P27658 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC12.81□□□□□ -0.36
COL8A1P27658 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC12.81□□□□□ -0.36
COL8A1P27658 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
COL8A1P27658 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC12.81□□□□□ -0.36
COL8A1P27658 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC12.81□□□□□ -0.36
COL8A1P27658 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
COL8A1P27658 RNA5SP359-201ENST00000364838 113 ntBASIC12.81□□□□□ -0.36
COL8A1P27658 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
COL8A1P27658 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC12.81□□□□□ -0.36
COL8A1P27658 AL645933.1-201ENST00000440087 609 ntBASIC12.81□□□□□ -0.36
COL8A1P27658 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC12.81□□□□□ -0.36
COL8A1P27658 RPS23-204ENST00000507980 836 ntTSL 2 BASIC12.81□□□□□ -0.36
COL8A1P27658 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC12.81□□□□□ -0.36
COL8A1P27658 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC12.81□□□□□ -0.36
COL8A1P27658 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC12.81□□□□□ -0.36
COL8A1P27658 TREHP1-201ENST00000531328 465 ntBASIC12.81□□□□□ -0.36
COL8A1P27658 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC12.81□□□□□ -0.36
COL8A1P27658 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC12.81□□□□□ -0.36
COL8A1P27658 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC12.81□□□□□ -0.36
COL8A1P27658 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
COL8A1P27658 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
COL8A1P27658 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL8A1P27658 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
COL8A1P27658 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms