Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 SEMA6A-202ENST00000343348 6878 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 AKAP8P1-201ENST00000434743 1349 ntBASIC11.88□□□□□ -0.51
HMGB3O15347 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 KRT8P24-201ENST00000560290 1559 ntBASIC11.88□□□□□ -0.51
HMGB3O15347 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 PKD1L2-210ENST00000533478 5669 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
HMGB3O15347 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.88□□□□□ -0.51
HMGB3O15347 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 KRT8P22-201ENST00000562317 1415 ntBASIC11.88□□□□□ -0.51
HMGB3O15347 LIN54-201ENST00000340417 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 AL671277.1-201ENST00000429656 993 ntBASIC11.88□□□□□ -0.51
HMGB3O15347 AC007967.2-201ENST00000432613 625 ntBASIC11.88□□□□□ -0.51
HMGB3O15347 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC11.88□□□□□ -0.51
HMGB3O15347 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC11.88□□□□□ -0.51
HMGB3O15347 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC11.88□□□□□ -0.51
HMGB3O15347 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC11.88□□□□□ -0.51
HMGB3O15347 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC11.88□□□□□ -0.51
HMGB3O15347 AP000842.3-202ENST00000569238 1080 ntBASIC11.88□□□□□ -0.51
HMGB3O15347 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC11.88□□□□□ -0.51
HMGB3O15347 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC11.88□□□□□ -0.51
HMGB3O15347 AC015910.1-201ENST00000579400 975 ntBASIC11.88□□□□□ -0.51
HMGB3O15347 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
HMGB3O15347 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 AL513190.1-201ENST00000621254 727 ntBASIC11.88□□□□□ -0.51
HMGB3O15347 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC11.88□□□□□ -0.51
HMGB3O15347 WASF3-201ENST00000335327 4790 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 GOLGA6L4-203ENST00000510439 4563 ntAPPRIS P2 TSL 5 BASIC11.88□□□□□ -0.51
HMGB3O15347 RTN3-206ENST00000377819 4937 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 DAPK1-201ENST00000358077 5743 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 CCDC144B-208ENST00000618081 8688 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC11.88□□□□□ -0.51
HMGB3O15347 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC11.88□□□□□ -0.51
HMGB3O15347 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
HMGB3O15347 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC11.88□□□□□ -0.51
HMGB3O15347 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 PLEKHM1P1-202ENST00000578036 4318 ntTSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 INE2-201ENST00000630399 1874 ntBASIC11.87□□□□□ -0.51
HMGB3O15347 NRXN3-217ENST00000634499 6069 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC11.87□□□□□ -0.51
HMGB3O15347 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC11.87□□□□□ -0.51
HMGB3O15347 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HMGB3O15347 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HMGB3O15347 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC11.87□□□□□ -0.51
HMGB3O15347 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
HMGB3O15347 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
HMGB3O15347 PDPK2P-202ENST00000562415 1191 ntBASIC11.87□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms