Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 RNU1-114P-201ENST00000365297 166 ntBASIC12.81□□□□□ -0.36
SHISA3A0PJX4 RN7SKP230-201ENST00000365642 335 ntBASIC12.81□□□□□ -0.36
SHISA3A0PJX4 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 AC114501.2-201ENST00000439631 535 ntBASIC12.81□□□□□ -0.36
SHISA3A0PJX4 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 MEIS3P1-201ENST00000495167 958 ntBASIC12.81□□□□□ -0.36
SHISA3A0PJX4 GCOM2-201ENST00000509133 1104 ntBASIC12.81□□□□□ -0.36
SHISA3A0PJX4 AC022616.1-201ENST00000518688 554 ntBASIC12.81□□□□□ -0.36
SHISA3A0PJX4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 AC069262.1-201ENST00000539058 672 ntBASIC12.81□□□□□ -0.36
SHISA3A0PJX4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 AL049840.4-201ENST00000602422 811 ntBASIC12.81□□□□□ -0.36
SHISA3A0PJX4 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.81□□□□□ -0.36
SHISA3A0PJX4 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 SERF2-209ENST00000409646 559 ntTSL 4 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 UPF3AP3-201ENST00000420996 769 ntBASIC12.8□□□□□ -0.36
SHISA3A0PJX4 NUS1P3-201ENST00000423502 862 ntBASIC12.8□□□□□ -0.36
SHISA3A0PJX4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 VDAC1P7-201ENST00000462417 847 ntBASIC12.8□□□□□ -0.36
SHISA3A0PJX4 SPDYE18-201ENST00000510091 1050 ntBASIC12.8□□□□□ -0.36
SHISA3A0PJX4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 ZNF890P-202ENST00000530367 1156 ntBASIC12.8□□□□□ -0.36
SHISA3A0PJX4 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 AC132872.1-201ENST00000566986 1195 ntBASIC12.8□□□□□ -0.36
SHISA3A0PJX4 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 BAP1-211ENST00000615113 489 ntBASIC12.8□□□□□ -0.36
SHISA3A0PJX4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SHISA3A0PJX4 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms