Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 FAM90A21P-201ENST00000510875 1396 ntBASIC27.52■■■□□ 2
SHROOM4Q9ULL8 FAM90A15P-201ENST00000514465 1395 ntBASIC27.52■■■□□ 2
SHROOM4Q9ULL8 FAM90A6P-201ENST00000515148 1394 ntBASIC27.52■■■□□ 2
SHROOM4Q9ULL8 FAM90A16P-201ENST00000526662 1395 ntBASIC27.52■■■□□ 2
SHROOM4Q9ULL8 FAM90A9P-201ENST00000527940 1395 ntBASIC27.52■■■□□ 2
SHROOM4Q9ULL8 FAM90A5P-201ENST00000528738 1395 ntBASIC27.52■■■□□ 2
SHROOM4Q9ULL8 FAM90A14P-201ENST00000530386 1395 ntBASIC27.52■■■□□ 2
SHROOM4Q9ULL8 FAM90A13P-201ENST00000534703 1395 ntBASIC27.52■■■□□ 2
SHROOM4Q9ULL8 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 AC139712.1-201ENST00000378256 1875 ntBASIC27.51■■■□□ 2
SHROOM4Q9ULL8 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 BRI3P1-201ENST00000440440 378 ntBASIC27.51■■■□□ 2
SHROOM4Q9ULL8 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 AC138701.2-201ENST00000553634 226 ntBASIC27.51■■■□□ 2
SHROOM4Q9ULL8 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 PTPN20CP-201ENST00000614090 920 ntBASIC27.51■■■□□ 2
SHROOM4Q9ULL8 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC27.51■■■□□ 2
SHROOM4Q9ULL8 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 USP35-204ENST00000530267 2419 ntTSL 2 BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 AL035414.1-201ENST00000451327 857 ntBASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 FAM86B3P-203ENST00000523992 854 ntBASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC27.51■■□□□ 1.99
SHROOM4Q9ULL8 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 AC018442.1-201ENST00000421439 2061 ntBASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 AC126177.1-201ENST00000547829 2218 ntBASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 IGHVIII-5-2-201ENST00000522505 261 ntBASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SHROOM4Q9ULL8 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 AC023157.3-201ENST00000619086 2088 ntBASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 HLA-DQB1-202ENST00000399079 1501 ntBASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 RPL35P9-201ENST00000446059 350 ntBASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 THY1-209ENST00000580275 578 ntTSL 3 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms