Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AC245100.3-201ENST00000441281 285 ntBASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AC103988.2-201ENST00000561804 725 ntBASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AC106886.1-201ENST00000568660 600 ntBASIC15.21■□□□□ 0.03
PCDH9Q9HC56 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AC138696.2-201ENST00000607376 223 ntBASIC15.21■□□□□ 0.03
PCDH9Q9HC56 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 ENPP7P14-201ENST00000621765 1040 ntBASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AP001002.3-201ENST00000623482 206 ntBASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AC132938.4-201ENST00000623835 848 ntBASIC15.21■□□□□ 0.03
PCDH9Q9HC56 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PCDH9Q9HC56 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 ST20-AS1-201ENST00000560255 4223 ntBASIC15.2■□□□□ 0.02
PCDH9Q9HC56 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.2■□□□□ 0.02
PCDH9Q9HC56 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 AC007551.1-201ENST00000457394 519 ntBASIC15.2■□□□□ 0.02
PCDH9Q9HC56 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 AL162274.1-201ENST00000617191 1098 ntBASIC15.2■□□□□ 0.02
PCDH9Q9HC56 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDH9Q9HC56 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms