Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LRCH3Q96II8 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.82■□□□□ 0.12
LRCH3Q96II8 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LRCH3Q96II8 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LRCH3Q96II8 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
LRCH3Q96II8 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
LRCH3Q96II8 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
LRCH3Q96II8 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
LRCH3Q96II8 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LRCH3Q96II8 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 CSNK1G2P1-201ENST00000442675 955 ntBASIC15.81■□□□□ 0.12
LRCH3Q96II8 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 IGHEP2-201ENST00000519308 1256 ntBASIC15.81■□□□□ 0.12
LRCH3Q96II8 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 FBXO36P1-201ENST00000579006 471 ntBASIC15.81■□□□□ 0.12
LRCH3Q96II8 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 SIGLEC20P-201ENST00000595243 1311 ntBASIC15.81■□□□□ 0.12
LRCH3Q96II8 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 ACTG1P22-201ENST00000603793 1099 ntBASIC15.81■□□□□ 0.12
LRCH3Q96II8 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LRCH3Q96II8 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
LRCH3Q96II8 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 AL109809.1-201ENST00000418979 1367 ntBASIC15.8■□□□□ 0.12
LRCH3Q96II8 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 ERP29P1-201ENST00000442902 706 ntBASIC15.8■□□□□ 0.12
LRCH3Q96II8 DUX4L50-201ENST00000455245 715 ntBASIC15.8■□□□□ 0.12
LRCH3Q96II8 RN7SL23P-201ENST00000484055 275 ntBASIC15.8■□□□□ 0.12
LRCH3Q96II8 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
LRCH3Q96II8 AC133540.1-201ENST00000620845 1019 ntBASIC15.8■□□□□ 0.12
LRCH3Q96II8 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LRCH3Q96II8 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms