Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
HPS3Q969F9 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS3Q969F9 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.28■□□□□ 0.2
HPS3Q969F9 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.28■□□□□ 0.2
HPS3Q969F9 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.28■□□□□ 0.2
HPS3Q969F9 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 AL136301.1-201ENST00000615830 422 ntBASIC16.28■□□□□ 0.2
HPS3Q969F9 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.28■□□□□ 0.2
HPS3Q969F9 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS3Q969F9 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS3Q969F9 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
HPS3Q969F9 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HPS3Q969F9 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.28■□□□□ 0.2
HPS3Q969F9 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.28■□□□□ 0.2
HPS3Q969F9 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HPS3Q969F9 E2F3P2-201ENST00000447755 1422 ntBASIC16.28■□□□□ 0.2
HPS3Q969F9 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HPS3Q969F9 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC16.27■□□□□ 0.2
HPS3Q969F9 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC16.27■□□□□ 0.2
HPS3Q969F9 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 AC063926.2-201ENST00000623766 1308 ntBASIC16.27■□□□□ 0.2
HPS3Q969F9 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC16.27■□□□□ 0.2
HPS3Q969F9 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.27■□□□□ 0.2
HPS3Q969F9 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.27■□□□□ 0.2
HPS3Q969F9 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC16.27■□□□□ 0.2
HPS3Q969F9 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 AL136309.1-201ENST00000403917 691 ntBASIC16.27■□□□□ 0.2
HPS3Q969F9 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.27■□□□□ 0.2
HPS3Q969F9 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.27■□□□□ 0.2
HPS3Q969F9 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.27■□□□□ 0.2
HPS3Q969F9 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.27■□□□□ 0.2
HPS3Q969F9 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.27■□□□□ 0.2
HPS3Q969F9 AC104989.1-201ENST00000519711 778 ntBASIC16.27■□□□□ 0.2
HPS3Q969F9 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC16.27■□□□□ 0.2
HPS3Q969F9 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.27■□□□□ 0.2
HPS3Q969F9 MIR4783-201ENST00000580343 82 ntBASIC16.27■□□□□ 0.2
HPS3Q969F9 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.27■□□□□ 0.2
HPS3Q969F9 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.2
HPS3Q969F9 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC16.27■□□□□ 0.2
HPS3Q969F9 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HPS3Q969F9 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC16.27■□□□□ 0.2
HPS3Q969F9 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HPS3Q969F9 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HPS3Q969F9 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HPS3Q969F9 AC126755.1-201ENST00000525846 6405 ntBASIC16.27■□□□□ 0.19
HPS3Q969F9 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.27■□□□□ 0.19
HPS3Q969F9 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
HPS3Q969F9 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
HPS3Q969F9 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
HPS3Q969F9 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
HPS3Q969F9 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.27■□□□□ 0.19
HPS3Q969F9 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HPS3Q969F9 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HPS3Q969F9 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
HPS3Q969F9 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HPS3Q969F9 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.27■□□□□ 0.19
HPS3Q969F9 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.26■□□□□ 0.19
HPS3Q969F9 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HPS3Q969F9 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HPS3Q969F9 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HPS3Q969F9 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HPS3Q969F9 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HPS3Q969F9 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC16.26■□□□□ 0.19
HPS3Q969F9 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC16.26■□□□□ 0.19
HPS3Q969F9 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HPS3Q969F9 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.26■□□□□ 0.19
HPS3Q969F9 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.26■□□□□ 0.19
HPS3Q969F9 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.26■□□□□ 0.19
HPS3Q969F9 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
HPS3Q969F9 HLA-V-201ENST00000429037 534 ntBASIC16.26■□□□□ 0.19
HPS3Q969F9 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.26■□□□□ 0.19
HPS3Q969F9 AC022210.1-201ENST00000449856 793 ntBASIC16.26■□□□□ 0.19
HPS3Q969F9 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.26■□□□□ 0.19
HPS3Q969F9 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.26■□□□□ 0.19
HPS3Q969F9 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms