Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 HOMER2P2-201ENST00000451621 847 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 DEF8-202ENST00000418391 852 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AL596276.2-201ENST00000447525 331 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 KLK11-210ENST00000600362 759 ntTSL 3 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC073869.1-201ENST00000415574 2762 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 FAM230B-208ENST00000451257 3566 ntTSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC026691.1-201ENST00000602502 2017 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 HTR2C-203ENST00000371951 3288 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC092506.1-202ENST00000401022 528 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SLC25A24P2-201ENST00000415059 510 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 POM121L10P-201ENST00000436994 1285 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AL391280.1-201ENST00000506969 1062 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AL365330.1-201ENST00000607459 531 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 PCDHB11-201ENST00000354757 4198 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 KCNAB2-201ENST00000164247 4273 ntAPPRIS P4 TSL 2 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 NOA1-201ENST00000264230 3415 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 MPV17-205ENST00000402310 906 ntTSL 5 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 MIR4313-201ENST00000580760 101 ntBASIC4.59□□□□□ -1.67
SYNE1Q8NF91 CYGB-203ENST00000589145 788 ntTSL 3 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SYNE1Q8NF91 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms