Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 OR8S1-201ENST00000310194 1080 ntBASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 ANKRD19P-201ENST00000338192 862 ntBASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 CNN2P10-201ENST00000443067 918 ntBASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 PUDPP3-201ENST00000445368 636 ntBASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 C2orf69P2-201ENST00000562032 1123 ntBASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SYNE3Q6ZMZ3 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 SRC-202ENST00000373558 4304 ntTSL 5 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 FUK-202ENST00000378912 3925 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 MIR658-201ENST00000385210 100 ntBASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 HLA-V-201ENST00000429037 534 ntBASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 CSF2RBP1-201ENST00000447905 391 ntBASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 KRT223P-202ENST00000449164 1292 ntBASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 USP3-204ENST00000540797 5474 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 COX11-210ENST00000639671 696 ntBASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SYNE3Q6ZMZ3 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 AP001267.2-201ENST00000532619 2086 ntBASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SYNE3Q6ZMZ3 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms