Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 CSF2RBP1-201ENST00000447905 391 ntBASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 APRT-204ENST00000563655 709 ntTSL 5 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 AC025181.2-201ENST00000606994 802 ntBASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 MIR6069-201ENST00000620069 79 ntBASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 CYP2AB1P-202ENST00000454440 1456 ntBASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.43
PDLIM3Q53GG5 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 AC018665.1-201ENST00000622927 1362 ntBASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 TOMM22P5-201ENST00000416399 439 ntBASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 NUS1P3-201ENST00000423502 862 ntBASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 CALR4P-201ENST00000431943 946 ntBASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 RPL13P2-201ENST00000440687 659 ntBASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 FO681548.1-201ENST00000455617 1132 ntBASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 TPRX2P-201ENST00000535362 881 ntBASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 AL033527.5-201ENST00000641382 801 ntBASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 AC005840.4-201ENST00000541242 2494 ntBASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 MTHFR-210ENST00000641407 2387 ntBASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
PDLIM3Q53GG5 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms