Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC10.15□□□□□ -0.78
PRKDCP78527 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC10.15□□□□□ -0.78
PRKDCP78527 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC10.15□□□□□ -0.78
PRKDCP78527 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 AL031673.1-201ENST00000611460 466 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 LILRP2-202ENST00000413572 1383 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 AC105446.1-201ENST00000441882 407 ntTSL 3 BASIC10.15□□□□□ -0.78
PRKDCP78527 CHCHD2P6-201ENST00000454346 447 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 STEAP2-AS1-202ENST00000478318 627 ntTSL 3 BASIC10.15□□□□□ -0.78
PRKDCP78527 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
PRKDCP78527 FAM213AP2-201ENST00000521579 683 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 RN7SL455P-201ENST00000580629 282 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 RN7SL322P-201ENST00000583519 299 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 AC148476.1-201ENST00000622182 705 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 NKILA-202ENST00000614771 2598 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC10.15□□□□□ -0.78
PRKDCP78527 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC10.15□□□□□ -0.78
PRKDCP78527 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC10.15□□□□□ -0.78
PRKDCP78527 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 RPL5P21-201ENST00000404620 815 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC10.15□□□□□ -0.78
PRKDCP78527 RN7SL47P-201ENST00000488710 299 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 FAM153C-208ENST00000511189 926 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
PRKDCP78527 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC10.15□□□□□ -0.78
PRKDCP78527 MNAT1-202ENST00000539616 1220 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 AC023051.2-201ENST00000541141 460 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 AC010202.1-201ENST00000551181 405 ntBASIC10.15□□□□□ -0.78
PRKDCP78527 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC10.15□□□□□ -0.78
PRKDCP78527 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC10.15□□□□□ -0.78
PRKDCP78527 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
PRKDCP78527 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
PRKDCP78527 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
PRKDCP78527 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.79
PRKDCP78527 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
PRKDCP78527 PCDHA1-201ENST00000378133 2726 ntBASIC10.15□□□□□ -0.79
PRKDCP78527 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.79
PRKDCP78527 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
PRKDCP78527 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
PRKDCP78527 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.79
PRKDCP78527 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC10.15□□□□□ -0.79
PRKDCP78527 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
PRKDCP78527 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
PRKDCP78527 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
PRKDCP78527 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.79
PRKDCP78527 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
PRKDCP78527 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
PRKDCP78527 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC10.14□□□□□ -0.79
PRKDCP78527 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC10.14□□□□□ -0.79
PRKDCP78527 TRIQK-219ENST00000523580 1630 ntTSL 2 BASIC10.14□□□□□ -0.79
PRKDCP78527 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
PRKDCP78527 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC10.14□□□□□ -0.79
PRKDCP78527 AC092810.2-201ENST00000431570 362 ntBASIC10.14□□□□□ -0.79
PRKDCP78527 GRPEL2P1-201ENST00000453145 339 ntBASIC10.14□□□□□ -0.79
PRKDCP78527 AL161727.1-201ENST00000457409 530 ntBASIC10.14□□□□□ -0.79
PRKDCP78527 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
PRKDCP78527 RN7SL460P-201ENST00000582806 258 ntBASIC10.14□□□□□ -0.79
PRKDCP78527 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC10.14□□□□□ -0.79
PRKDCP78527 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
PRKDCP78527 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC10.14□□□□□ -0.79
PRKDCP78527 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC10.14□□□□□ -0.79
PRKDCP78527 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC10.14□□□□□ -0.79
PRKDCP78527 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC10.14□□□□□ -0.79
PRKDCP78527 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
PRKDCP78527 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
PRKDCP78527 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
PRKDCP78527 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
PRKDCP78527 AL031577.1-201ENST00000339867 399 ntBASIC10.14□□□□□ -0.79
PRKDCP78527 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC10.14□□□□□ -0.79
PRKDCP78527 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
PRKDCP78527 RBMX2P5-201ENST00000424312 969 ntBASIC10.14□□□□□ -0.79
PRKDCP78527 RN7SL351P-201ENST00000469306 248 ntBASIC10.14□□□□□ -0.79
PRKDCP78527 BLK-205ENST00000529894 2017 ntTSL 5 BASIC10.14□□□□□ -0.79
PRKDCP78527 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC10.14□□□□□ -0.79
PRKDCP78527 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC10.14□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms