Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.63□□□□□ -0.23
RNF4P78317 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.63□□□□□ -0.23
RNF4P78317 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.63□□□□□ -0.23
RNF4P78317 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 AL008718.2-201ENST00000609206 1313 ntBASIC13.63□□□□□ -0.23
RNF4P78317 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RNF4P78317 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
RNF4P78317 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.62□□□□□ -0.23
RNF4P78317 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
RNF4P78317 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 AC020907.1-201ENST00000616460 1350 ntBASIC13.62□□□□□ -0.23
RNF4P78317 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
RNF4P78317 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
RNF4P78317 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 INTS4P1-203ENST00000641008 3683 ntBASIC13.62□□□□□ -0.23
RNF4P78317 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.62□□□□□ -0.23
RNF4P78317 AL157407.1-201ENST00000435784 904 ntBASIC13.62□□□□□ -0.23
RNF4P78317 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 KLF2P1-201ENST00000447438 1042 ntBASIC13.62□□□□□ -0.23
RNF4P78317 SERPINA13P-202ENST00000478994 924 ntBASIC13.62□□□□□ -0.23
RNF4P78317 OARD1-212ENST00000482515 832 ntTSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.62□□□□□ -0.23
RNF4P78317 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.62□□□□□ -0.23
RNF4P78317 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.62□□□□□ -0.23
RNF4P78317 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.62□□□□□ -0.23
RNF4P78317 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.62□□□□□ -0.23
RNF4P78317 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 BNIP3P13-201ENST00000599968 566 ntBASIC13.62□□□□□ -0.23
RNF4P78317 AC009884.2-201ENST00000603110 324 ntBASIC13.62□□□□□ -0.23
RNF4P78317 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
RNF4P78317 KHSRPP1-201ENST00000427983 1768 ntBASIC13.62□□□□□ -0.23
RNF4P78317 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.62□□□□□ -0.23
RNF4P78317 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
RNF4P78317 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
RNF4P78317 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RNF4P78317 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.61□□□□□ -0.23
RNF4P78317 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.61□□□□□ -0.23
RNF4P78317 KRT8P28-201ENST00000433288 1390 ntBASIC13.61□□□□□ -0.23
RNF4P78317 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
RNF4P78317 AGGF1P1-201ENST00000509500 2073 ntBASIC13.61□□□□□ -0.23
RNF4P78317 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.61□□□□□ -0.23
RNF4P78317 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
RNF4P78317 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms