Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.51□□□□□ -0.09
PKNOX1P55347 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
PKNOX1P55347 AC133539.2-201ENST00000604757 467 ntBASIC14.51□□□□□ -0.09
PKNOX1P55347 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
PKNOX1P55347 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.51□□□□□ -0.09
PKNOX1P55347 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.51□□□□□ -0.09
PKNOX1P55347 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
PKNOX1P55347 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.51□□□□□ -0.09
PKNOX1P55347 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
PKNOX1P55347 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.51□□□□□ -0.09
PKNOX1P55347 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.51□□□□□ -0.09
PKNOX1P55347 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
PKNOX1P55347 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
PKNOX1P55347 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 AC003102.2-201ENST00000589195 1469 ntBASIC14.5□□□□□ -0.09
PKNOX1P55347 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.5□□□□□ -0.09
PKNOX1P55347 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.5□□□□□ -0.09
PKNOX1P55347 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
PKNOX1P55347 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
PKNOX1P55347 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
PKNOX1P55347 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.5□□□□□ -0.09
PKNOX1P55347 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 RET-205ENST00000615310 4337 ntTSL 5 BASIC14.5□□□□□ -0.09
PKNOX1P55347 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 ACKR1-201ENST00000368121 1240 ntBASIC14.5□□□□□ -0.09
PKNOX1P55347 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.5□□□□□ -0.09
PKNOX1P55347 ACTBP8-201ENST00000403258 1108 ntBASIC14.5□□□□□ -0.09
PKNOX1P55347 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.5□□□□□ -0.09
PKNOX1P55347 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.5□□□□□ -0.09
PKNOX1P55347 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.5□□□□□ -0.09
PKNOX1P55347 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 ENPP7P5-201ENST00000541031 1031 ntBASIC14.5□□□□□ -0.09
PKNOX1P55347 AC123567.1-201ENST00000548294 1261 ntBASIC14.5□□□□□ -0.09
PKNOX1P55347 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.5□□□□□ -0.09
PKNOX1P55347 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.5□□□□□ -0.09
PKNOX1P55347 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.5□□□□□ -0.09
PKNOX1P55347 TMEM261P1-201ENST00000604899 340 ntBASIC14.5□□□□□ -0.09
PKNOX1P55347 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
PKNOX1P55347 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.5□□□□□ -0.09
PKNOX1P55347 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.5□□□□□ -0.09
PKNOX1P55347 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
PKNOX1P55347 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
PKNOX1P55347 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PKNOX1P55347 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
PKNOX1P55347 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.49□□□□□ -0.09
PKNOX1P55347 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
PKNOX1P55347 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.49□□□□□ -0.09
PKNOX1P55347 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.49□□□□□ -0.09
PKNOX1P55347 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
PKNOX1P55347 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
PKNOX1P55347 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.49□□□□□ -0.09
PKNOX1P55347 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.49□□□□□ -0.09
PKNOX1P55347 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 SPTLC1P1-201ENST00000447199 261 ntBASIC14.49□□□□□ -0.09
PKNOX1P55347 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.49□□□□□ -0.09
PKNOX1P55347 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.49□□□□□ -0.09
PKNOX1P55347 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.49□□□□□ -0.09
PKNOX1P55347 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 RFPL4AP1-201ENST00000530883 850 ntBASIC14.49□□□□□ -0.09
PKNOX1P55347 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.49□□□□□ -0.09
PKNOX1P55347 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PKNOX1P55347 AC090505.1-201ENST00000430515 1834 ntBASIC14.49□□□□□ -0.09
PKNOX1P55347 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms