Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL3A1P02461 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
COL3A1P02461 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC18.97■□□□□ 0.63
COL3A1P02461 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
COL3A1P02461 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC18.96■□□□□ 0.63
COL3A1P02461 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC18.96■□□□□ 0.63
COL3A1P02461 AL591122.2-201ENST00000624125 1853 ntBASIC18.96■□□□□ 0.63
COL3A1P02461 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL3A1P02461 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC18.96■□□□□ 0.63
COL3A1P02461 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC18.96■□□□□ 0.63
COL3A1P02461 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.96■□□□□ 0.63
COL3A1P02461 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 BX679664.3-201ENST00000414070 555 ntBASIC18.96■□□□□ 0.63
COL3A1P02461 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC18.96■□□□□ 0.63
COL3A1P02461 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC18.96■□□□□ 0.63
COL3A1P02461 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
COL3A1P02461 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.96■□□□□ 0.63
COL3A1P02461 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC18.96■□□□□ 0.63
COL3A1P02461 FTLP1-201ENST00000449155 526 ntBASIC18.96■□□□□ 0.63
COL3A1P02461 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC18.96■□□□□ 0.63
COL3A1P02461 AC113935.1-201ENST00000471722 555 ntBASIC18.96■□□□□ 0.63
COL3A1P02461 TCAM1P-207ENST00000485295 1537 ntBASIC18.96■□□□□ 0.63
COL3A1P02461 RN7SL81P-201ENST00000493781 261 ntBASIC18.96■□□□□ 0.63
COL3A1P02461 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC18.96■□□□□ 0.63
COL3A1P02461 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL3A1P02461 DUT-208ENST00000559540 1441 ntTSL 2 BASIC18.96■□□□□ 0.63
COL3A1P02461 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC18.96■□□□□ 0.63
COL3A1P02461 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.96■□□□□ 0.63
COL3A1P02461 MIR4706-201ENST00000582134 82 ntBASIC18.96■□□□□ 0.63
COL3A1P02461 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC18.96■□□□□ 0.63
COL3A1P02461 AC103691.2-201ENST00000618824 433 ntBASIC18.96■□□□□ 0.63
COL3A1P02461 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL3A1P02461 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.95■□□□□ 0.62
COL3A1P02461 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL3A1P02461 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC18.95■□□□□ 0.62
COL3A1P02461 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
COL3A1P02461 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL3A1P02461 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL3A1P02461 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC18.95■□□□□ 0.62
COL3A1P02461 AC068760.1-201ENST00000493579 1953 ntBASIC18.95■□□□□ 0.62
COL3A1P02461 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL3A1P02461 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
COL3A1P02461 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
COL3A1P02461 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC18.95■□□□□ 0.62
COL3A1P02461 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
COL3A1P02461 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC18.95■□□□□ 0.62
COL3A1P02461 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC18.95■□□□□ 0.62
COL3A1P02461 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC18.95■□□□□ 0.62
COL3A1P02461 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC18.95■□□□□ 0.62
COL3A1P02461 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC18.95■□□□□ 0.62
COL3A1P02461 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC18.95■□□□□ 0.62
COL3A1P02461 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL3A1P02461 AC005618.3-201ENST00000624928 458 ntBASIC18.95■□□□□ 0.62
COL3A1P02461 AL805961.1-201ENST00000642026 753 ntBASIC18.95■□□□□ 0.62
COL3A1P02461 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
COL3A1P02461 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
COL3A1P02461 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL3A1P02461 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL3A1P02461 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC18.95■□□□□ 0.62
COL3A1P02461 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC18.94■□□□□ 0.62
COL3A1P02461 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.94■□□□□ 0.62
COL3A1P02461 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC18.94■□□□□ 0.62
COL3A1P02461 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
COL3A1P02461 MST1P2-201ENST00000457982 2291 ntBASIC18.94■□□□□ 0.62
COL3A1P02461 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC18.94■□□□□ 0.62
COL3A1P02461 AC005089.1-201ENST00000619486 2241 ntBASIC18.94■□□□□ 0.62
COL3A1P02461 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 KRT8P18-201ENST00000413425 1445 ntBASIC18.94■□□□□ 0.62
COL3A1P02461 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC18.94■□□□□ 0.62
COL3A1P02461 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC18.94■□□□□ 0.62
COL3A1P02461 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
COL3A1P02461 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL3A1P02461 AC006480.2-201ENST00000609770 1337 ntBASIC18.94■□□□□ 0.62
COL3A1P02461 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms