Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC18.55■□□□□ 0.56
NPHP1O15259 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
NPHP1O15259 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC18.55■□□□□ 0.56
NPHP1O15259 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
NPHP1O15259 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC18.55■□□□□ 0.56
NPHP1O15259 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
NPHP1O15259 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 AC144522.1-201ENST00000625111 1658 ntBASIC18.54■□□□□ 0.56
NPHP1O15259 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.54■□□□□ 0.56
NPHP1O15259 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.54■□□□□ 0.56
NPHP1O15259 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.54■□□□□ 0.56
NPHP1O15259 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
NPHP1O15259 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
NPHP1O15259 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.54■□□□□ 0.56
NPHP1O15259 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 AL583805.1-201ENST00000391389 531 ntBASIC18.54■□□□□ 0.56
NPHP1O15259 AC006122.1-201ENST00000493323 440 ntBASIC18.54■□□□□ 0.56
NPHP1O15259 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC18.54■□□□□ 0.56
NPHP1O15259 RBM8B-201ENST00000555532 525 ntBASIC18.54■□□□□ 0.56
NPHP1O15259 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
NPHP1O15259 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC18.54■□□□□ 0.56
NPHP1O15259 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
NPHP1O15259 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.54■□□□□ 0.56
NPHP1O15259 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
NPHP1O15259 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.54■□□□□ 0.56
NPHP1O15259 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPHP1O15259 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
NPHP1O15259 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.53■□□□□ 0.56
NPHP1O15259 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
NPHP1O15259 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
NPHP1O15259 AC015909.3-201ENST00000572855 1794 ntBASIC18.53■□□□□ 0.56
NPHP1O15259 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
NPHP1O15259 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.53■□□□□ 0.56
NPHP1O15259 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 AL512430.1-201ENST00000392575 860 ntBASIC18.53■□□□□ 0.56
NPHP1O15259 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC18.53■□□□□ 0.56
NPHP1O15259 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.53■□□□□ 0.56
NPHP1O15259 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC18.53■□□□□ 0.56
NPHP1O15259 AC242376.2-201ENST00000619355 883 ntBASIC18.53■□□□□ 0.56
NPHP1O15259 AC133540.1-201ENST00000620845 1019 ntBASIC18.53■□□□□ 0.56
NPHP1O15259 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC18.53■□□□□ 0.56
NPHP1O15259 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
NPHP1O15259 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC18.53■□□□□ 0.56
NPHP1O15259 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.53■□□□□ 0.56
NPHP1O15259 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
NPHP1O15259 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPHP1O15259 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
NPHP1O15259 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC18.52■□□□□ 0.56
NPHP1O15259 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.52■□□□□ 0.56
NPHP1O15259 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms