Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 TREML5P-201ENST00000421694 576 ntBASIC15.32■□□□□ 0.04
CCDC188H7C350 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC188H7C350 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC188H7C350 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC188H7C350 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC188H7C350 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.32■□□□□ 0.04
CCDC188H7C350 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CCDC188H7C350 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC188H7C350 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC188H7C350 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CCDC188H7C350 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CCDC188H7C350 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC188H7C350 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC188H7C350 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC188H7C350 AL390955.2-201ENST00000603032 514 ntBASIC15.32■□□□□ 0.04
CCDC188H7C350 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC188H7C350 AC004840.1-201ENST00000636359 365 ntBASIC15.32■□□□□ 0.04
CCDC188H7C350 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC188H7C350 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 COL6A4P2-202ENST00000504443 2753 ntBASIC15.32■□□□□ 0.04
CCDC188H7C350 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 AC114271.1-201ENST00000612689 2813 ntBASIC15.32■□□□□ 0.04
CCDC188H7C350 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC188H7C350 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC188H7C350 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC188H7C350 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CCDC188H7C350 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CCDC188H7C350 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 RN7SKP230-201ENST00000365642 335 ntBASIC15.31■□□□□ 0.04
CCDC188H7C350 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CCDC188H7C350 ACTBP8-201ENST00000403258 1108 ntBASIC15.31■□□□□ 0.04
CCDC188H7C350 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC188H7C350 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC188H7C350 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.31■□□□□ 0.04
CCDC188H7C350 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC188H7C350 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC188H7C350 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC188H7C350 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CCDC188H7C350 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 AL590440.2-201ENST00000641973 1595 ntBASIC15.31■□□□□ 0.04
CCDC188H7C350 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CCDC188H7C350 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 NCLP1-201ENST00000445357 1963 ntBASIC15.31■□□□□ 0.04
CCDC188H7C350 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC188H7C350 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 NUTM2HP-201ENST00000442076 2498 ntBASIC15.31■□□□□ 0.04
CCDC188H7C350 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC188H7C350 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC188H7C350 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC188H7C350 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CCDC188H7C350 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC188H7C350 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC188H7C350 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC188H7C350 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC188H7C350 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC188H7C350 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC188H7C350 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC188H7C350 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC188H7C350 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC188H7C350 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC188H7C350 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC188H7C350 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms